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53-2544-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23903894 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -161; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2544-1 - 5-prime edge 
    AAAGCCATGA TCGGATCGGA GTGAGATAAG TGAGGATTCT CCCGCTAATT 
    TTGGTCGCTT ATCTCTCATC TTCGAGATTT TGACTCCTGA TATTATTTTT 
    TAAAAATCGA TTCTTTCCAT TAATGTGTGG TTGTGTTTAA AGCAAGGACA 
    CGATTGTAAA TTGACGTTTT AGGGTTTTTT GTTTGTGTTT GGCAGAGTAA 
    ACTATTTATA GCGAGACACC ACTTACTCTT CCGCCATTTG TTAAACCTCT 
    AAAGCTCGTG AGAACCAAAA GCTTGAATCA AACGCTTTTG AAATCATGGG 
    TACTTTTTCA ATTCCGTTTC TTTCTCGTTC GATTTCTGGC AAAGATATAA 
    CCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23904021 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -288; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2544-1 - 3-prime edge 
    TGTCTCGGTT CAGTCACATT TCGCAATCAG AGCGTTAAAA CGAGACCACT 
    TCAAGAACCC TTCTCCTCGT ACTTTCTGCT CGTGTTTTAA ATCGAGGCCT 
    GACTCGTCTT ACCTTAGTTT AAAGGAACAG TACCTTGCTT CGTTTCCAAA 
    CCGGGTTTAG TCACTACTAG ATACAGACAT AAACTCCAGG TGAAAAGCAA 
    TTTTCTCTGA TTTTGATTTC TTCTAAAAAA AATTCAAAAG TTTTGATTTT 
    TCCGGTTTTG GTTCCCGTCC GATTTCGACT A

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR