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53-2556-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212648 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2556-1 - 5-prime edge 
    ATGGTTAATG GGTGGAAGAG GATTGTGAAG GACGAAGATC TCAAGGGAGG 
    AGATTTCTTA CAGTTTGAGT GCTGATGGCT CTAGTTGTTT CCATTTCTGT 
    ATCTATGAGC ATAGGACAAT GTGTAAAAAG ATAAGAAGAA GTTCAGATCA 
    AAGCGAGGAG ATCAAAGTGG AATCTGATAG TGATGAACAA AATCAGGCCA 
    GTGATGATGT TTTATCTCTT GATGAGGATG ATGACGATTC TGATTATAAT 
    TGTGGTGAAG ACAATGATAG TGATGATTAT GCTGATGAAG CTGCTGTCGA 
    GAAAGATGAT AATGATGCTG ATGATGAAGA TGTTGATAAT GATGCTGATG 
    ATGTTCCTGT TGAAGATGAT GATTATGTTG AGGCTTTTGA TTCTAGAGAT 
    CATGCTAAGG CTGATGATGA TGATGAAGAT GAAAGACAGT ATCTGGATGA 
    TCGTGAGAAC CCATCTTTTA CTCTGATCCT TAATCCGAAG AAGAAAAGCC 
    AACTGGTAAG TAAAAACTGA ATGTGAAAGA GCTTTTCATT TAACATCGTT 
    GGGTTGTGAG TTTTTATGAT GTTTTTTTTC ATAAAGCAGC TCATCCCAGC 
    TCGGGTTATC AAAGACTATG ACTTGCACTT NCCTGAGAGT ATCACTCTTG 
    TCGATCCACT TGTGAAAAAA TTCGGGACAT TGGAGAAGCA GATCAAGATT 
    CAGACCAATG GTAGTGTGTT TGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212764 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2556-1 - 3-prime edge 
    TTAACCATAA CGAATTTCTC AGTATCATCA TCACCACAAC ATTTCTTTAA 
    CTCCAATTTC CAAATATTTC CAGAAATGCT TCTAACAGTT ACAGTTTCAG 
    GCAAAGACTT TGGTAAAAAT CTGGTGAAAG AAATGGGTAG TACCTGCATT 
    ATACAATCTA AAAGTTTCAA CCAAATAGAA ATCTACAGAA GAACATCTCA 
    GAAAAACCCA CAAAAAAAAC AGAGAGAAGA GAAGAGTGTT TTACCATATC 
    ATCTCCGGAC TCATCAGGTA AGTAAACTTT GAAGAATTTT GGAACACAAT 
    TATCCAAAGA AACTCCTGTT CGATAGCAAG AAAAGATCAA AACAGAGGAT 
    ACATTGTGTA AATGTAGAAT CAAGAACAAA AAAGAAGAAA CCTTTGTTCA 
    TCT

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR