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53-2557-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24123711 [Map]; Strand: w
      • AT5G59890.1 - [+] show detail - actin depolymerizing factor 4
        Distance: 0; Region: exon3 (3UTR)
      • AT5G59890.2 - [+] show detail - actin depolymerizing factor 4
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 53-2557-1 - 5-prime edge 
    ATGAAATGGT GTTTTCTATT CTCTTACAGT CTCTTGTGAC TGTTAGATAC 
    ACTTGACACC CTTCATTCTA TCTGTCTGGT CTGTTCTCTG TGTCTATGTT 
    ACCTTACAGT GTCTCATCTA TATTCAAAAT TATCACAAGG TTTGTGCTGT 
    GTTTGCTTCC TTTGTTTCAA CTCTACCAAA GCTTAAGATT AAGATTTGTG 
    TAAGATGATT CGTTTAAGCT TCCCTTTGTT CTCTTTGTTA CAGAGGGTAT 
    AAAAAATGCA AAAAGTATTC ACCAAAATTA TTTCTTATCT ATAAATGGTT 
    TAGATGTCAA AGAATGTTTC AACTTATACA ATTACCAAAG GGGTTAGGAT 
    TTAGAACTAG TGTCATTCGA AGTAGTTGTT CTACTGGTTT TGTTGTTAGG 
    TATCAAGCCT TGTCTCAACA TCTCATTCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952478 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1876; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4704; Region: intergenic
    2. Chromosome: 4; Position: 3952656 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2054; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4526; Region: intergenic
    Flanking Genome Sequence: 53-2557-1 - 3-prime edge 
    CATTTCATAA TAGTCGAATA TAATCGGAAG CTACCANNNC GGNCCGTNAG 
    ACCACGCTGT AGCCCTATNG CTTTGTGTCT TCCAACAAGG AAACACTACT 
    TAGGCTTATA AGATCGGGTT CCGGTTTAAG TTGTAATACT CAATCATACA 
    CATGACAACA AGTCATATTC GACTCCAAAA CACTAACCAA CCTTCTTCTT 
    GCTTCTCAAA GCT

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G59890.1

Model type
Protein coding
Short Description
actin depolymerizing factor 4
Curator Summary
actin depolymerizing factor 4 (ADF4) mRNA, complete cds
Computational Description
actin depolymerizing factor 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.1); Has 1469 Blast hits to 1466 proteins in 267 species: Archae - 0; Bacteria - 5; Metazoa - 601; Fungi - 174; Plants - 513; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59890.2

Model type
Protein coding
Short Description
actin depolymerizing factor 4
Curator Summary
actin depolymerizing factor 4 (ADF4) mRNA, complete cds
Computational Description
actin depolymerizing factor 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.2); Has 1456 Blast hits to 1455 proteins in 265 species: Archae - 0; Bacteria - 5; Metazoa - 592; Fungi - 174; Plants - 513; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR