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53-2559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16981200 [Map]; Strand: c
      • AT5G42460.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 85; Region: intergenic
      • AT5G42470.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (Inter...
        Distance: -1105; Region: intergenic
    Flanking Genome Sequence: 53-2559-1 - 5-prime edge 
    AATAGTGAAC ATGTGATTTT ACCCTTTACA ATAAAAGAAA TAAAAAAAGT 
    ATGTGCGTGA TGAAGAAATA TGAGACCTGA CAATTAATCT TTTATTATTT 
    TATTTTCTTA CAACCTTTAT TTTTCACATA TATATACTAG CAATGGTAAA 
    AAAAGCTCTC AAACGTAAAG TTGAAGATGC ATTTGACTGT TTCAAAGAAA 
    TGTCTAGAAG AGCCACACNG AGAGTTTACA TATAGTAGAG AGGCCATGTC 
    TCTGAGATTC CAGATAACTG ATAACAATGG TCAGATTTAT ACAATCGAAG 
    ATGACAGAAA AAGAAAACAG TAGTTCGTAA TAATCAGGTT AGCTGCCTGA 
    TTTGCTCTGA GCTTGGAACA TAAGAACATA CAAGTGGGAA ACAACTCGTG 
    TATGCTTCTT CCCCAATATC CACTTTTTTG AAGTATCCGT TCTTCCCAAC 
    AACGTAAGCC ATGTCGCGAT CAGTAGCCTC ATCCATATCT TTATCAAAAA 
    CCACAACAAC ATTCTTCTTC TGGTCAATGA AGAAACTCCC AGCCTCTGCC 
    AGAAACTGAA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9517825 [Map]; Strand: c
      • AT4G16915.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-2559-1 - 3-prime edge 
    GTCACTGTTT TTTACTGTGA GTGTAGGAAA CGCCACGGTA GCAGTGATGC 
    AATTGTTGCT GATGAGGTTG CTATTTAAAA ATTTAGTTCC AACACTTTTT 
    TGTTGTTGAT AATTCTCTTG TGAAATTGTG AAATACATTT TTCTTTACCA 
    AATTTATTCA TTGATTTAAA GAGAGAAAAA TAACCTTTGG TAACATACAC 
    GTAGAGAGAT ATGTGTGTTT CAAAAGACAA GACTGTTATA TTTACATCTT 
    TTTAGGAAAG CGAATTTTTC AAAGAAGCAA AACAGAGAGA AGTAAGAACA 
    GAGTGCTTCT GCTGTTCTGG ACATGGAGCC ATAAAAGGTT TCTAGTTCTC 
    ACTAACTGCT CCATCATCTG CAGGAGAAAA TGGCTTCTGT GAAAAACTAA 
    GAAATCGTCT TGTTTGGTCG ATCCCACGTT CATTACAAAA CAGAGTTGTA 
    ATACGTTTCA GGTTGCCTTA ACAATGTGAT AAGCTGTGGA GACGGCTAAG 
    GATCCAGGAA AGGAATGTTA ACAATGTGAT GGTGTGAATT CAGTCAAGGC 
    AGATCTTCAC TGTTCAGGGT

AT4G16915.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42460.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G17830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42470.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR