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53-2570-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24508913 [Map]; Strand: w
      • AT5G60910.2 - [+] show detail - AGAMOUS-like 8
        Distance: -3597; Region: intergenic
      • AT5G60920.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: 2283; Region: intergenic
    Flanking Genome Sequence: 53-2570-1 - 3-prime edge 
    TGTCACACAC AGAAAAAATA GACAAGGCGT GATGTTAAAA TGGTCCTAAG 
    TTGACATATG TAAGTAAATT AAAAGCTTTT AACGATTGAT ATCTAAATAT 
    TCAAATTTCA CAAAAGGATG ATTCGCTATA AATATTAATA ATGGAAAATA 
    TGAGGTTTAT GTCCACTATA TATTGGTTTT TTTNTTTGAC AAGACAACGT 
    GCGATATAAT ACATGCGGTC TTGAGATGTG GACTTAACAT AAGGTATGAG 
    CAGAAAAAAA GATCCAAAGT TTTGATCTAA GAGGGCAAAC ATTTATCGTA 
    CTAAGGAGAG AACCAAATTT ATGTTAATAA CGATTCAGAG AAATTAAATA 
    CGTTTAGGTA CTATCCATCC ATTTAGATGT TTAGGGCTCA TCAACACACA 
    AATGTGGTCC ATTTCTTTTT GTTCATGTGG TCCAATTTTG GTATATACTA 
    TATAGTCTAT AGTACCTTTA CATTCATCTC ACTC

AT5G60910.2

Model type
Protein coding
Short Description
AGAMOUS-like 8
Curator Summary
MADS box gene negatively regulated by APETALA1
Computational Description
AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 3783 Blast hits to 3782 proteins in 618 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 10; Plants - 3766; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60920.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator Summary
Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
Computational Description
COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR