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53-2584-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24509037 [Map]; Strand: w
      • AT5G60910.2 - [+] show detail - AGAMOUS-like 8
        Distance: -3721; Region: intergenic
      • AT5G60920.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: 2159; Region: intergenic
    Flanking Genome Sequence: 53-2584-1 - 5-prime edge 
    ACACTCGTAC ATGATATTTG GTACGCATAT ATATGATATG GTGCAAAGTG 
    AAAAATAATT TTTTGGCATG AAAATTATAA ATAGAAGTTT TTATTTCACC 
    ATAAGGGCCT TCATCATGAC TACCACAGTT CTATTTTATT TTACAGTATT 
    TCTTAAATAC GCAAGTTTGA AGTTTGTGAG GTAATGATTT ACCCAAACAA 
    AAATACCAAA ACATCTTTAA TGGCTACTAA AATATCTTAA GAGAGAATGT 
    GAATAATATT ATTGATCCAG TCACATGTCT TTATATATTA TTCTTTCAAT 
    TAATTTTTCT TTATTTCAAA TAAATATACT TTATTTTTAA GAATATAAAA 
    TTAAGGAAAT TATGTGTCTT AGGACTATAA TCTCCCTCTC TCTTGTCCTA 
    GGGATAATCT CTTCTCAGAA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12131761 [Map]; Strand: c
      • AT4G23160.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 8
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2584-1 - 3-prime edge 
    GTCGCGGAGA CCTATCCCCG GAAGTTTGCA GTAACTGCGT TGCCTTCTCC 
    GTTAACGAAT CGTTAACTCG GTGTCCAAAT CAGAGAGAAG CTGTGTTCTA 
    TTACGAAGAG TGCATACTCA GATACTCTCA CAAGAATTTT CTATCGACAG 
    TTACATACGA AGGAGAACTT ATCATGAGGA ACCCCAATAA TATTTCTTCT 
    ATTCAAAATC AAAGAGACCA GTTTATAGAT TTGGNTCAAT CTAATATGAA 
    CCAAGCTGCC AATGAAGCAG CCAACAGTTC TAGAAAATTC TCTACGATAA 
    AGACCGAATT GACCTCACTC CAGACTTTGT ATGGGCTTGT TCATCTCA

AT4G23160.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (TAIR:AT4G23140.1); Has 131284 Blast hits to 128961 proteins in 4748 species: Archae - 114; Bacteria - 13787; Metazoa - 45525; Fungi - 11866; Plants - 40839; Viruses - 427; Other Eukaryotes - 18726 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60910.2

Model type
Protein coding
Short Description
AGAMOUS-like 8
Curator Summary
MADS box gene negatively regulated by APETALA1
Computational Description
AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 3783 Blast hits to 3782 proteins in 618 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 10; Plants - 3766; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60920.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator Summary
Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
Computational Description
COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR