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53-2585-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9460 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2585-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT CGGTGACATT 
    TTTTCATAGT TTATTTGTTA ATAAGATTCT TTTTGATTGT GTAGACAACG 
    TTCTTCCCAG GGAGAGTGGA TTTGGAGTTT CCAACAGTCT TTTTCAGACA 
    GCTTCCAACA AAAAGGTTAA TGTATCTTCT GCCGGTTTAG CAAGGGCCAA 
    GGCATTGTTA GGACTAGAAG AAGATGATTT GAATGGATTT AACCATGTGA 
    ACCAGTCGTC TTCTTCCTCC CAGCAACATG GGTGGTCCGG ATTAAAAACT 
    CATGAGGAGT TTGATGCTAC AGTAGTTAAG CATCATTCAG GAACTCCAGG 
    ACAATATGAG GATTATGTAT CTGGGAAGAG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9541 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2585-1 - 3-prime edge 
    CTTCTAATAT TCATCCTCTA AACGAAGTAA GATGTGTGTT GATTAGTTCT 
    TCACTATTCA TCATTTCATC TGATAACAAC CAAACTCAAG AACCTGGAAG 
    TTGAACGGAG TAGCAGCACA AAGAACAAGT TCATATGTAA ACGCGCACAC 
    AGCCTATACC TGGAAATAAG ACTTTAAAAA AGAGGAGATA AGAACACACC 
    TGAGTCAATA ATCTTATCAC TTCCTAGAAT AGACATAGCT TTGGCAATTG 
    AAGACTCTTT CAAAGGGACA GATTTCCCCG AGGCCGTCCT GAACATTGGC 
    AAAGTTTCAG CTGTATCCAC TTGTCTCATT TGGGGAATTG AGCAATTTGT 
    GTTCCGCAAA TCTAAAGTGT AGCCAAGAAC ATGGAACATT CAAAAGATTT 
    TCAGGAAACC ATTTTCACCA ACATTAAGTA ACAATTCAAG GGAATTCAGA 
    AACAAATGAC TAGTCAAGGG AATTCAATAC TGTCACATAA AGTACCTGAG 
    TAAGTAACCT TCTCTGC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR