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53-2593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26505563 [Map]; Strand: w
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2593-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAATGGA AGTCGATCTC GCCGGGATAC GCTCTCTCTG 
    TCGTTTAGGG ACGCTCCCTC CCAGTTGCTG CGGTTGCTGA CCGGTAGAAA 
    GCTGCTGCTG GCNGTTCTCG GCGTTTAGCG GCAGGAACCC ACGTGCTCTT 
    CACGTGAGTG GGACAGTCAA GGCCACGGCT CTTGCAGCAA GTCCTACATC 
    TCATGTGAGA GCAGTCTTTC TTAGATTGAT TCCCACAATC CTGGCAGCTT 
    GGTCCGCCGC TACCGCTACC GCTTCTCATC ATCATCAACG CACCGCCGGA 
    AGTTTCAATT AAGCTCCGGT TGCTCGGTCC AACACCTAAA CCCGCAGCGG 
    AAGTGTAAAG ATCCAGCCTT TGTTGCTGTT GCTGCTGCTG CTGGAAAATG 
    ATTTCTTGAT TGTTTGGGTG TTGCCATAGC TCAAGGGTTC CTTTGTAAGA 
    AGGACCAGCT TCTCCACCGT CAGCGTTAGA GTTAGGGTTT CTGCACCAAA 
    GCCAAGATTC TGTTCCCGAT GAANAANGAT TATTANNGTN TGNTCTGTGG 
    TTGNCTGGGA GNGNNNCCTN CTNCGNCGGG NNCTANCNAN AAAAANNCNG 
    NNNTTTTNCN NTNCCNNNNN NNNTNTNTNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26502830 [Map]; Strand: w
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -875; Region: promoter
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2593-1 - 3-prime edge 
    TCTGTTCCTG ATCCACTCTT CTCTCCCCTG TTTGTCTTTC TCCATTATCT 
    CTTCTTCCGG AGACTGGAAA GATGGCATTG GGCAACAAAC GCACTTCGTC 
    GA

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR