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53-2597-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2507152 [Map]; Strand: w
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 366; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -1981; Region: intergenic
    Flanking Genome Sequence: 53-2597-1 - 5-prime edge 
    GTTCATCGTA TGGTAAGCAA CAAACGGAAA CTCCAAAACC ACCGGAAACC 
    ATTAGAACTT CAAACACAGA AGTCTATCGG TTTTTAATTG GAGAAGCTCA 
    CTAAACTTCA ACATCAAAAC TGCAAAGAAA ATATCTTCCC AAAGCAATTG 
    ATTCCAAATC TCCGAAGAAC ATCGGTGAAA CATTTAAATC GATGGAGCTT 
    TCAGCAACAC CTATAAACGA AGAGAAACAA ACTCGATTCC ATAGATCGGT 
    TAAAGAAATA GCCACAATTG CATAAATTCA ATCCAAAGTC ACAAAAAAAA 
    ANCCTTANCC CCTANCTCCN ATTNGTTNTT AAAAATNGAA ATNGATAAAC 
    TNGGANCNCA AATCGANCTN TTTAANCNCC NGGGATTCAN GGAATTNCAA 
    TTCCAGTNCT CAAATANAAT NGCAAAANAG TNTANTTANA CCGAAANTAN 
    GGAANTCGAN ACAAANAANG CTTANTTTNG ANCCAAAAAC ANTNNGGCCA 
    AANGCTAAAA NAANCNCCAA ANCTNTTTGG GGAATTTNTA NAACTTAGCT 
    AGCCCACCGT TCCTGTANAA GCCAACGGAA GCCANACACA AGCCAACCNC 
    CACCGTAAAA GGGAAACAAG ATGGNGTCAN AANANAGCCG ATCAAACGTT 
    GTCGAAAAGA CAAACGTTAA CGGACAANAG CCANACATTT NTGCTGANAA 
    AGCCNTAGGA TTNTGTTCAN AAGCCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2507028 [Map]; Strand: w
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 242; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -2105; Region: intergenic
    Flanking Genome Sequence: 53-2597-1 - 3-prime edge 
    GGCGACAACA TAAACTTCAT CTCTCAACGT GTTAAACTTT AGTTCATAGC 
    ATCACATGTG GCTCTGTGTT GGAAGTTTTA ATGTCTACTT CCTCAAAAGG 
    TTTAGTTTCT AGATTGAGCC TTTCATAATA TTAGGCCTTT AAGTTGAATT 
    TGTTGGTTAC AGTTTAATGT GTGCAGGGCC TGTAAGTGGA AGGTTACAAT 
    GTTGTATTTC TTACAACTTA AGATATAAAT AAAGAGCAAC ACTTATGAGG 
    AAAAAAA

AT4G04925.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR