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53-2598-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10023279 [Map]; Strand: c
      • AT5G28000.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 2028; Region: intergenic
      • AT5G28010.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -1534; Region: intergenic
    Flanking Genome Sequence: 53-2598-1 - 5-prime edge 
    TGTATTATAA CTTAGCTTCC TAGATTGCCT CTATCTTTTC CTTTATCTTG 
    TAGGTTGGTG TCGATCTGAT CAGACTTACA TCTTTGGGCT GAGTTTACTG 
    GTTTTTCGAT CCATTTTTGG TTTAAGCNTG GGTTAACCGG AGGTTGCTTA 
    ATCCCCCTCT TTCAAAAAAT CTTAAATGTC ACATATACCC ATAAAATATC 
    AATCTCAACA CCTTCAAATA AATTTGTTAA TACAACCTGA TCTACGCTAT 
    GCGCACCTGA TGAAGTGTAT GATTGGAAGT GATATTTCAA ACGTAGTTTT 
    CCTTACCGAC TGCTCCGATC TTTAGACCAA AAAATTCCGA CAAATTTGAC 
    TTTGTCGGAA CTTTGTCGGA TATGCCATTT CCGACTAACA CCGTTGTTGG 
    AAATTGTGAC GTTTTCTTGA TCAAGATTTC AAGTTATCAT TTGTTTCTTA 
    TTAAGAGTTA AAAGATCGTT GTTTTTTCGT ATTCTTCATT TTCGCCGGTT 
    TTAGAAATTG TGATTGGTTC TAGTTATTCC TCCCTAGATT TTTTCTTGTT 
    GGTACTAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10023396 [Map]; Strand: c
      • AT5G28000.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 2145; Region: intergenic
      • AT5G28010.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -1417; Region: intergenic
    Flanking Genome Sequence: 53-2598-1 - 3-prime edge 
    ATAATACAAA AGAAAGAAAA AGATAGATTT TCGCTAGAGA AATAAGGAAA 
    TCAAACATGT ATATGTTAAA CTAACTATCA CTTTCTTATA AATAGAGAAG 
    CACCCCTTTG AAAGGGAAAT ATGTGGACTC ATACACAAGA TCAACCAAAA 
    CACCTAGAAA AAACCCTTAT AACATAAATT ATGAATGACT TGATCCCTTA 
    TGATGGATAT ATAAACAACC TACATAAGGT GCAACTATTA TATATATAAA 
    ATCTCAATTT GTCATCCTAC TTTTGTTGTT AAACTTGAAC CTTGTTGAAA 
    TCCTCCTTAA AACCGACTTG ATTTATCACC TTGTTTACCA CAGGTGATAT 
    CTCAAATCTA CAGATATCAA CACGGTTTGT CAATATCGTA TAAGTGATAA 
    CTACCACATT TGATTAACTC CGGAGAAATA GCTTTC

AT5G28000.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G28010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28010.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G28000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR