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53-2601-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23134104 [Map]; Strand: w
      • AT5G57123.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6450; Region: intergenic
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: 1421; Region: intergenic
    Flanking Genome Sequence: 53-2601-1 - 5-prime edge 
    TATAGATGTT CAATTTCACT GTAAGAAACA CTATTGTAGC ATAGAGCTTT 
    GTATTTTAAA TTTTCATATT CTTCTTATGC ATGTTTTTGG TAACGAAGCA 
    TTGGAAAATA AAATCTCAAA AGCTCTGCAT CCTATTTACG AAAGGGAGAC 
    TATGATTCTT TTTCCTTAAT TCCTTTGTTG TGTCTTACCC ATTTCTTGAA 
    AACGATGTGC TTTATTTTTT GAAATTTACA TAACAAAACT ACCTTACAAG 
    TAAGATACAG TTTCATTTGA AGCTATTCTT GCTAGTAAAT TAAATTTCTT 
    CTCATTTTCA TTGATGGTTC ATCTACTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23133988 [Map]; Strand: w
      • AT5G57123.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6334; Region: intergenic
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: 1537; Region: intergenic
    Flanking Genome Sequence: 53-2601-1 - 3-prime edge 
    CATCTATAAG TATTACAGTG TCTAAGATCT AGAAAATAAT CCTCCAATTA 
    ATGGTTTTGT AGGCGCAGCA TCATCTCATG TATACATGTA CTGAGGGAGT 
    CGATGATGAT GATGATTTCA TTTGTTGAAC ATGCATTTTT GCGTGCAATC 
    AAACNTGCGC AATTCTTCAT TTCTCCAAAC CCTCTCTTTG ATCAAGAGTT 
    TCTTTCTTTG AAACCTTTCA ACTTTTTTTC CACTTTTTTT TTCTTTCTTT 
    GAAACCTTCC ACTTGATCGG GAATANCAAA CAAATTNGTA CAANAATATA 
    AAANANTATC TTGNCTGAAA TTGCCANATC CTATGTAAGC TTTTATAGTT 
    GATTTGATGG AANAAAGCTT ACATATAGAC AGTNGAATTA AACATACCCC 
    GNGTTTATCT AGGACGNCTN CTAATCTNAA ACGGGGACAG NATNCNAGGC 
    NTNGAAAAAN CCCCATTGGN TNGGGGGCCT CGGCCCNNAA AANATTTTAN 
    AAAAAAANTC CCNTTCNACC CAANATTTNG GANCCNTATT TNGGNCNTCC 
    CNNCCCCCNN TNNNNGNTNN NNNNNNNNNN NNANNNNNNN AAN

AT5G57123.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57126.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR