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53-2615-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041981 [Map]; Strand: c
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2615-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTGT TTTGACCATC GTAATTTCCA TATAAAAAGT
    AAGCCCTGAT CAAATATTTA CGCTCCTTGA ACACACTCAG ATTGTAGCAA
    TTCCGTATTC CCTCTGGGAA ATATCTCAGC GTTCTGTATG GCTTCAAGAA
    TTTTCTCTCT TGATTTGCTT GGACTCTACC AGTTTTTCCG CTCTGGATGA
    ATGTTGCGTC CGAAGAGAAC AACAGACCAG TACGATTCTC TTTATAAGGA
    GACGTCTCAT TTGGGGGTAG CCCGCAATCC AAACTGATGA ACCCTGTTAA
    CAGACATGGT AAACATTAAC CATTAGAACC ACTGCACTTC TGAGAAACAA
    AGTGATGTAT ATAGAACAAA GAAGATATCC CATACCTTGT TGGTCTTGAG
    CTTGAACAAT ATGAATGATG GTCAAAGTTA ACAGTACCAA CAAAAGCCCA
    AAAGAACTCT CCATATTCTC TCAACTCCAA ATAAATAAGC AAACCAAAAT
    CATACACTAA AAGAAAAACT TTTGATTGGT GAAAAAATTG AGTAAAGGTG
    GTTTCTATTG CAACTTCACC AAGGGAAGAA GATGAAGGTT AGTTAAGAGG
    AAAAAATTGT CCCAACATCA TCATTTTGAA GTAGCCAGAC CAAGAAGCAC
    GTGAACCAAT AATGAATTGG TATCAATGAT ATAAGACGAG TCCCACAAGA
    CTGTCTTTTC GTTTGTTTGA TTCCTCTCAC CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24614527 [Map]; Strand: w
      • AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
        Distance: -790; Region: promoter
    Flanking Genome Sequence: 53-2615-1 - 3-prime edge
    GTTTCAGCTA AAGAGTACAA AAAACTGTCA AAACTATTAT ATCAACATTC 
    CAGTAAAACA TTATTTCCCA CATATATATA TATATATATA TATANNCACG
    TNTAAGNAAN TATCNCTNCA CATCATCATN TACTGGGNNC CCAATNTCNA
    ATATTTTTNG ATTNTATNCA CACNGGGGGN NGATTNCACA CATCAAANTC
    TGAANACTCA ANAACAGCCT CTCTATNNCT TCTCAACNGG GGAAAAAAAA
    AANGTTNTNN GGGGGGGCCC NNCTCNGGGT TTTTNNCCAA ANNCCCANNC
    NAGACTANNN NAANCCCNNC CCCNANGGNN GTNCCCCCCC CCCCTAAAGN
    NGANNCNCAA AANACNGGNG GGGGAANAAA NANNCTCTAA NCGCNTTNNG
    TCNCCCCCCN AAANTTTTNT ANAAAANAAT GGGGGGGCCC CNNAAACNCC
    CTTTNNNNAN NGCNCNTTGG GGNCNNAAAG TTTTTNNGGG GGGNTNCCCC
    CAAANNGGGG NGTTNAAAAA CNGGGGGGGG GGGGNANACA CAANNGGAAA
    ACTNGNCCCC ACGCATANTN GGGGGGGGGN GAAAACAGAN AAGNGGGGGG
    NCCCGGGGTT TTTTNTNTCA NCCTNCACNG GGNGGGANAN NGNNCCACCC
    NCATGNGGGG GGACTTTTTC CCACATAAAC ATNTNTNTNT NTATATATAT
    NTNTCCGGNG CCCCCCCCCC CCCCCCCC

AT5G59670.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61190.1

Model type
Protein coding
Short Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Computational Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Link
InterPro Scan - TAIR