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53-2615-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041981 [Map]; Strand: c
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2615-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTGT TTTGACCATC GTAATTTCCA TATAAAAAGT 
    AAGCCCTGAT CAAATATTTA CGCTCCTTGA ACACACTCAG ATTGTAGCAA 
    TTCCGTATTC CCTCTGGGAA ATATCTCAGC GTTCTGTATG GCTTCAAGAA 
    TTTTCTCTCT TGATTTGCTT GGACTCTACC AGTTTTTCCG CTCTGGATGA 
    ATGTTGCGTC CGAAGAGAAC AACAGACCAG TACGATTCTC TTTATAAGGA 
    GACGTCTCAT TTGGGGGTAG CCCGCAATCC AAACTGATGA ACCCTGTTAA 
    CAGACATGGT AAACATTAAC CATTAGAACC ACTGCACTTC TGAGAAACAA 
    AGTGATGTAT ATAGAACAAA GAAGATATCC CATACCTTGT TGGTCTTGAG 
    CTTGAACAAT ATGAATGATG GTCAAAGTTA ACAGTACCAA CAAAAGCCCA 
    AAAGAACTCT CCATATTCTC TCAACTCCAA ATAAATAAGC AAACCAAAAT 
    CATACACTAA AAGAAAAACT TTTGATTGGT GAAAAAATTG AGTAAAGGTG 
    GTTTCTATTG CAACTTCACC AAGGGAAGAA GATGAAGGTT AGTTAAGAGG 
    AAAAAATTGT CCCAACATCA TCATTTTGAA GTAGCCAGAC CAAGAAGCAC 
    GTGAACCAAT AATGAATTGG TATCAATGAT ATAAGACGAG TCCCACAAGA 
    CTGTCTTTTC GTTTGTTTGA TTCCTCTCAC CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24614527 [Map]; Strand: w
      • AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
        Distance: -790; Region: promoter
    Flanking Genome Sequence: 53-2615-1 - 3-prime edge 
    GTTTCAGCTA AAGAGTACAA AAAACTGTCA AAACTATTAT ATCAACATTC 
    CAGTAAAACA TTATTTCCCA CATATATATA TATATATATA TATANNCACG 
    TNTAAGNAAN TATCNCTNCA CATCATCATN TACTGGGNNC CCAATNTCNA 
    ATATTTTTNG ATTNTATNCA CACNGGGGGN NGATTNCACA CATCAAANTC 
    TGAANACTCA ANAACAGCCT CTCTATNNCT TCTCAACNGG GGAAAAAAAA 
    AANGTTNTNN GGGGGGGCCC NNCTCNGGGT TTTTNNCCAA ANNCCCANNC 
    NAGACTANNN NAANCCCNNC CCCNANGGNN GTNCCCCCCC CCCCTAAAGN 
    NGANNCNCAA AANACNGGNG GGGGAANAAA NANNCTCTAA NCGCNTTNNG 
    TCNCCCCCCN AAANTTTTNT ANAAAANAAT GGGGGGGCCC CNNAAACNCC 
    CTTTNNNNAN NGCNCNTTGG GGNCNNAAAG TTTTTNNGGG GGGNTNCCCC 
    CAAANNGGGG NGTTNAAAAA CNGGGGGGGG GGGGNANACA CAANNGGAAA 
    ACTNGNCCCC ACGCATANTN GGGGGGGGGN GAAAACAGAN AAGNGGGGGG 
    NCCCGGGGTT TTTTNTNTCA NCCTNCACNG GGNGGGANAN NGNNCCACCC 
    NCATGNGGGG GGACTTTTTC CCACATAAAC ATNTNTNTNT NTATATATAT 
    NTNTCCGGNG CCCCCCCCCC CCCCCCCC

AT5G59670.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61190.1

Model type
Protein coding
Short Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Computational Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Link
InterPro Scan - TAIR