1. Home
  2. Mutant Lines
  3. 53-2618-1

53-2618-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 73112 [Map]; Strand: c
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -3228; Region: intergenic
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 146; Region: intergenic
    Flanking Genome Sequence: 53-2618-1 - 5-prime edge
    GGCCTGGAGA TGATCTCAAA ACAGAACATT ACAAATTATC ACGTTAGTGA 
    AGCCTGCACC GTTCTGAAGG TTTGCATATT TGCTGGTGCC TTGATAATAA
    AGACTGGTGA TGCGATCTCG AATGGTCTTG TCGATGACNG GTAATGAGGT
    GAGTGCACNG GGTTGTGTTC TTTATGGTAT TTTCTAGTGT TACGTTCTCT
    CCAAACGTTG TATTTTACAG TTCTCATATA TTAAATTTCT CAAATATAAA
    TAAACTATTT TGGATCAACA AAATAAAAAT TTAATATTTT CTAAGAAACA
    ATGTTGCTTT CATATAAAAC ACTCTTTCTA CTATAAGAAA ATACTTAGTA
    TATCAGTGTA ATAAGGAACT TTTTGAATTG ACAACTTATA TTTTATTTTG
    GGAATGTGAC ACGTTTACAC ACTTTTACAA AATCTTATTC TTTTTGAGGC
    ACTTTTCAGG GATGAGGCAC TTTTCTTTGT TTTTGGAGGT AAAAAGGACA
    ATTATATCCT TTCCAAATAA CTGTCTAATC ACGTAATATT TTCTTTAAAA
    AGAAATGGAA T
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 73226 [Map]; Strand: c
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -3342; Region: intergenic
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 32; Region: intergenic
    Flanking Genome Sequence: 53-2618-1 - 3-prime edge
    TCTCCAGGCC TAGCTAACTT TATGCTAGGT TATTCAGCTG TGTATGTTTA 
    AATGCGGCAT GCAGTTACTG TTTTGATAAA GTAGCTTTAG AAGAATGTAG
    TGTGTTGGGA ATAAGAGTAA TTTTGTTTTG TGTTTACCAA ATTACAGCAC
    AACACAGACA TATTCATTCT TCATGCTCGT GATAGTGCCT AGAGAATTAA
    CGACTTGTGA TCACATTATT AGAGGAAACT CCTAACTAAT AAGGATTAGG
    ATAAACAACA CTACATGTGG TACACTCAAC AACTCAAAGA TTATCTCCTG
    AAACCTTATC CAACTGTTCT TCGGCCCCAA GCAGTGATGT AGATGGCTGG
    TCAAAGGCGA GGACATGGTC TGACTGATGG TAAGAAGTGT TCAAGCCTGA
    TTCTAGTATT GGGTGACCCA CTACAATATC AGGTGTATAA CCAGCTGCAC
    CTCTCACCAA TCGAGGCTTC TTTGATAATC TCTCCTCTCC TGT

AT2G01050.1

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR