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Mutant Lines
53-2623-1

53-2623-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24818241 [Map]; Strand: c
- AT5G61770.3 - [+] show detail - PETER PAN-like protein
  Distance: 598; Region: intergenic
- AT5G61780.1 - [+] show detail - TUDOR-SN protein 2
  Distance: -3017; Region: intergenic

TGCCTGTGTG TATACAGTAT ATCTCAACTT TTCAATACTC GTTTTTTTTN 
GTCTTCTCTT TNGCGACTAA AAAACACCTT ATCTGTTNGT NGGTTAATGT 
NCCTTTTTTT TTNTTTTTGG AAACCTTGGC AAAAACCGGA AANANTTGGG 
GNNNTNNNCC AAAATCCCGG GGAAAAATTT TNNTTNAAAN NNNCNAAAGG 
GNTNGNAANN GGGGCCCNNN NNNNAANCNN NCNNNNNNNN NCNCCCCNCC 
CNNAAAANCC NNGGGACAAA NTTNNNGNAN AACCCC

3 prime edge [+] show sequence

Chromosome: 5; Position: 24818316 [Map]; Strand: c
- AT5G61770.3 - [+] show detail - PETER PAN-like protein
  Distance: 673; Region: intergenic
- AT5G61780.1 - [+] show detail - TUDOR-SN protein 2
  Distance: -2942; Region: intergenic

ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
CCTCTGTTCA AGTACAAAAG ACGCAAGTAC AAATCTGTTG AGGAATCTAA 
CGGCTTTCCG TCTCGATTCC TGTGGGCTGA TTAAAATTCT CTAGCCATAA 
CTTTTTTGTG ATGCCCCCCA AATTTTAGTT GTTTCTATAC ATACACCCCT 
TTGTTTTATA ATTATTTTAG AAAACCCCCA TGTATCTTCT TCTTCTTTTG 
ATAGGATGTA TCGGGCTCGT TAATCTAAAT ATGGAATTAT CCAATAAAAG 
CACTGAAAAA AACAAATCAA GGAACATCAA ATGCGTTTTT TATACGATTT 
AATTAGTGCA TATATGAGAA AACATCGATT TTTCGTGATT TAGTTTTAGT 
TTACTTTTAA AAAAAAAATC AAACNTAGCA AATTTTACTA GTTTAAAATT 
TGANAACATA TTAATTCCTT TTCAACAATT AAATTATCAT CAATGANANA 
TNTCACAATC TAAAAAACAT TGANAAANAA AACGTTTTTT TGACAATNTG 
AAAATATGAN CTAAGTTTCA TCGCGTCACT TTTTGATTTA TAACTGTNGA 
TTTAATTTGT TATTTTTACC AAATAAAAAA AGAAAAGAGG TTNTATGGAA 
AATGACTAGT AGCTAATCGT ATTAGCGTTG ACAACGGATA GNGNGATATA 
TATATATAGN CGGACNATAG CTAGCTCATA AAGCTAAGTG ACAAACCTAA 
TTTTCACCGG NGAATGAAAT TGGNCGGGAA GTAGGT

AT5G61770.3

Model type: Protein coding
Short Description: PETER PAN-like protein
Computational Description: PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61780.1

Model type: Protein coding
Short Description: TUDOR-SN protein 2
Curator Summary: Involved in the regulation of AtGA20ox3 expression, as well as seed germination.
Computational Description: TUDOR-SN protein 2 (Tudor2); FUNCTIONS IN: RNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: response to cadmium ion, protein secretion, gibberellin biosynthetic process, seed germination, response to stress; LOCATED IN: cytosol, nuclear envelope, endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 1 (TAIR:AT5G07350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR