1. Home
  2. Mutant Lines
  3. 53-2625-1

53-2625-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23439601 [Map]; Strand: c
      • AT3G63470.1 - [+] show detail - serine carboxypeptidase-like 40
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2625-1 - 5-prime edge 
    CAGTGACGAG CATCCCGGTC CTGTTAATTA TTTCCAACAC ACTTTATGCA 
    TATGTATGTA TTATTAGTCA CCCATATTTC TGTAATCAAA TTCTCGATTT 
    TGTGACAGAG CTAATTCACC TGATGAGCCT TACTATTAAC GTCTCTGGTG 
    AATTTGAATA TATGTTGTAC ATTGCATTTT ATTTTTATGG AAATCAGTAT 
    ATAATATATA GATAGATACG TAGTGGCTGG CTAAATAATT GACCAGTAGA 
    GCTGTGCAAC AAACAAAGCA CGCCGAGAAA TCCTCAGCAT GTGCCATTTT 
    TGAAAAAAGG CAAATCATTT TTCTTTTTCT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23439717 [Map]; Strand: c
      • AT3G63470.1 - [+] show detail - serine carboxypeptidase-like 40
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2625-1 - 3-prime edge 
    CGTCACTGGC GTATGGAGCA TTACAAGAGC TTGGGCCGTT CAGAGTACAC 
    AGCGACGGCA AAACGCTTTT TAGAAACCGA TATGCATGGA ACAATGGTAC 
    CTATCGTTTT TCTTTTTTAT TAAATAACAA AAATAAATTA ATGGTAAACG 
    ATTCTTGTGA TTAAAAAATT ATCAAACGGG TGGTGGTGGT GCAGCTGCGA 
    ATGTCTTGTT CTTAGAATCG CCGGCGGGAG TGGGGTTCTC GTACACCAAC 
    ACGACGTCGG ACCTGGAGAA GCACGGGGAC AGGAATACCG CAGCTGATAA 
    CTACATCTTC CTGGTTAACT GGCTGGAGAG GTTCCCGGAG TACAAAGGCA 
    GGGACTTGTA CATCGCCGGT GAGAGCTATG CCGGCCACTA TGTTCCGCAA 
    CTTGCCCATA CTATCCTTCT CCATCACCGG AGCTTCTTCA ATCTCAAGGG 
    CATTCTGATA GGAAATGCGG TGATCAACGA CGAGACCGAC TTGATGGGTA 
    TGTACGACTT TTTCGAGAGT CATGCTTTGA TCTCCGAAGA TTCTTTGGCT 
    AGACTCAAGA GCAACTGCGA TCTCAAGACG GAGTCTGCGA GTGTAATGAC 
    TGANGAGTGC GCGGTGGTGT CCGACCAAAT AGACATGGAT ACATATTACC 
    TCGACATCTA CAACATATAC GCTNCATTGT GCCTNAACTN CACGCTCACT 
    CGCAGGCCCA AGCGANGAAC CACAATA

AT3G63470.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 40
Computational Description
serine carboxypeptidase-like 40 (scpl40); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 39 (TAIR:AT3G52020.1); Has 3527 Blast hits to 3467 proteins in 341 species: Archae - 0; Bacteria - 144; Metazoa - 641; Fungi - 871; Plants - 1469; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR