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53-2626-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55862 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2413; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1337; Region: intergenic
    Flanking Genome Sequence: 53-2626-1 - 5-prime edge 
    GTCACACATA CAATATAGTG AAAGATGAAA CCCAGCAAAC AAAAAAAAAG 
    GGAAAAAAAN GTTGGANANC TTTNNAATNN GTNTTNCCCN GNCCNTNTTT 
    NNTNAAAAGT NNNCTNCANN GGGNNANNAG NCCCGTTTCC CCCNNGGCAN 
    CNTAGGCTTT GGNTTNGGGT NAAAANCTNT TTNNAAAANT AANTGGGNAA 
    AAANNNCTTN NCCNTCCCNT TNGTTTTTNA ANNGAGGGAN TCCGGGNGNG 
    NAANGTANNG NANTNNTANT NGTNTTNNTA AGGGNTGGAT ANCNTNANTT 
    TNAATNCTAA NNNNTTTGGC TAAACCTCGC NGGGNCNGGN CANGGTTTTT 
    NNTTNNNGGN CNNNTNAANN GGTTCCCTTT GGANTTTAAA CTNGGNATTT 
    TTNANNNNNG NCTCCNTGGG NNCNNTTTAN GGGNGCCAAC CCCCCGNGCC 
    CTNGGNNTGG CTGGCGGGNG GCCNAGCNTN ATGTTNNNGN NGGCTGTNAA 
    AANTANGGCN NCTTTNNNNN NNAAAAANNA ACNNNGGNNT GGGNNNANNA 
    NCNNNCCCGG GAANGNCNCN TNTNTTTTGG CNGNNAGTTT NNNTNGNNGG 
    NTNNNNCCCG GNNTNNNNNN NNANANCNNG NT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55746 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2297; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1453; Region: intergenic
    Flanking Genome Sequence: 53-2626-1 - 3-prime edge 
    TGTGTGACAT GTCATTAAGA AATGAATAAC AACAGGCTAT TCATTGCTTT 
    TTTCTATTCA TTGCTTACAA AAAGTAAAAT GATGATAAAA TACGCAGCTT 
    TTGGTGTTAT TTGTCCTTCA ACTAATTGAG TTATCATTTT TCTTTTACTC 
    CTTTTAGACA CCGCATATGT ACTTTTGTCT CAAAGAAGAC TCTCCTAGGA 
    GTTAGGAAGA TTTTGATTTT GTTATAATCA GACTTTAACT CACATCTGTC 
    TTCCATCATC CCACTGTTTT TCAAGTATTT TATTATTAGT TGTTAAAAAC 
    TTCTACGTCC AAAATCTCAA TCACTACGAG TATTGCAATG TTGATATTGT 
    GCGTTAAATG TATATGTATA TAATTCCAAA TTTCCAACAA TTGGTTTATA 
    AACGATGGCA CTAACATAAC CTCATATATT GTGATACAAC GAAAGGCACC 
    GGATGGTGGA ACGCATCACG CATCATGCAT CCTCGATCCC TTTTCAAAGT 
    GGTATGTAAG AGATCATTAT TTCAACATAA CATACATTTG CTATGATGAC 
    GCATTTTAGT CAAATTAGTT GTTTGTTCAA TCATATTAAT AAGGGTCAAC 
    AGATATTTAT ACGAACTGTA ATTAAAATGA TAAAATCCAA AGCGACAAGT 
    TTGCTACTAC CAAATGTGTG TTAATATATA TAATTTAGAA ACATTGAATT 
    TGAGAAAATG AGTATACNGG TGCACAAAAA

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR