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53-2628-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15670486 [Map]; Strand: c
      • AT3G43820.1 - [+] show detail - pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine o...
        Distance: -710; Region: promoter
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2628-1 - 5-prime edge 
    CTTTCGGTTC AATGGAAGTT CGAATCCAAC CAACAATCAT TAAGTTGACT 
    GTTTTCCAAT TTTCAAAGTT TGGATCAATA AATTGTGGTT TTGGAATTGA 
    ACCATTGATG AACCCTGTTT TACGCCTTGG CTTGGAGTGC GTTCACCATA 
    TCTGTTGCAC AAGAGTTGTA ATTGTCACTA GATAAGTAAA CTGACGAGAT 
    CATAGCTCCA GGATTGTCGG AGCTAGATAA CATATAAGGT GAAACTTTCA 
    CCGTTTCTAG CAGACGAGCC ATCATCAACG AGAGACATGT TNNNNNNNNN 
    NNNNNNNNNN NNNNNNNNNN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15670612 [Map]; Strand: c
      • AT3G43820.1 - [+] show detail - pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine o...
        Distance: -836; Region: promoter
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2628-1 - 3-prime edge 
    AAGTCTACGA TGACGTACAT CTCCGGCGCT CACCAGTTGT GGATGGACTT 
    AGAGCAACGT TTCTCTGTGG GAAACAAGGT TCAGATTCAT AAACTGATTG 
    GTCAACTTGC TGCGTGTAAA CAAGATGGGC AATCAGTTCT TGATATGGTC 
    GTTTGTGTAA TCTTTGGGAG GAATATCAAA TCTTCAAGCC AGTCACAGTG 
    TGTTCTTGTG GGTTGTGTAT TTGTGGTGCT ACTAGCAAAC CAACAAAAGA 
    AAGAGAAGAC GAGAAGATTC ACTTGTTTGT TTTGGGTCTC GACGACTCTC 
    GGTTTGGTGG TTTAAGCACA ATGCTTATCG CAATGGATCT GTTTCCTACT 
    CCTGGTGAAA TATACCCTTG CGTTATCAGG GAAGAACAAC GCCTTGCTTC 
    AGTCAGGATT CGTGAGCAGA GACAAGAAGT GGTTGGCTTC GCAACACATG 
    GCGATCAAAG TAGTTTGACA TCTTTGCGAC AAGAGATACA GCGTGGAGGA 
    CGATCAGACT CCTCTATCAT TAAGCCTCGG TCCATGATGT GTTCCAATTG 
    TGGTCGTTCA T

AT3G43820.1

Model type
Pseudogene
Computational Description
pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine oxidase (copper-containing) precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam profile PF01179: Copper amine oxidase, enzyme domain; blastp match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681 amine oxidase {Canavalia lineata}
Link
InterPro Scan - TAIR

AT3G43825.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR