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Mutant Lines
53-2633-1

53-2633-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 2994395 [Map]; Strand: w
- AT5G09660.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon4 (CDS)
- AT5G09660.2 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon3 (CDS)
- AT5G09660.3 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon3 (CDS)
- AT5G09660.4 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon4 (CDS)

TGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATAATT TGTGACTCCG GCGTGTCCCC CAACTACTGG 
CACATCGACT TCTCTTGGAT CAAGGCCAAG AACTTCTGCC TGCACAAGAA 
TTTAAAAAGA TAAATTCTTA GTGTTTAAAA CTCAACAAAA CCAAATGGAG 
TGAGGAATCA TTAGGCATTA TTACCACAAA TGTGTTGGCA CGAGCAACAT 
CGAGTGTAGT AACTCCAAGG AGCTTCTTAG GATCATAAGT TCCAGCTTTC 
TTGAAAACCT CAGCGGCAAT GGGGACAGTA GAGTTCACAG GGTTGCTGAT 
CAAGTTGACA ATAGCATTAG GACAACATTT TGCTACACCT TCACATAGTG 
TTTTAACAAT CCCAGCATTG ATTTTAAACA GATCATCGCG GGTCATCCCT 
GGTTTCCTCG GTATACCGGC TGGTATGATC ACAAGATCCA TACCCGTTAG 
CGCGTCCTCA AGCTGCTTCG CTCCCAAGAA CCCGCGGACC TAATCAATCA 
AGAGTGGTCA TTACTCATTC ATTAGCAAGA AGAAGTAATC TTATGTGAAG 
TTTTCAAAGT TTAAGAGAGA TACTTACAAC AGCTCCAGTG TCCATATGAC 
TGACGTCAGC AGTGACGCCA GGAGCATTGA CAACATCGTA GAGATGAAGT 
AAAGAGACAG AGGGTTCATC TTCATCANCA AAGATAAAGA TTGTCCAATT 
CACCTGCAGT TCAANAATTG CTACTTTGAA T

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 2994345 [Map]; Strand: w
  - AT5G09660.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron4 (CDS)
  - AT5G09660.2 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron3 (CDS)
  - AT5G09660.3 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron3 (CDS)
  - AT5G09660.4 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron4 (CDS)
Flanking Genome Sequence: 53-2633-1 - 3-prime edge
```
CACAATCTTG CCACTACTGT CACAGGTATC ATATGAATAG GACGAAAGGT 
TCATTTCCAT TACATTAGCT TCTCTGCTAA CTGATTGTTT TTGCATAATC 
CTTTTTCCTC AGGTTAAACC TCCTAGCAGC TTCACACCTC AAGAAATTGA 
GTACCTGACA AACCGGATTC AAAATGGTGG AACCTGAAGT TGTGGAGGCA 
AAAGCTGGAG CTGGTTCTGC AACACTTTCA ATGGTAAAAC CAAACCAAAT 
CACTTTAATA CATCATCATT ACACCTGTTC ATCTCACTTC GA
```

AT5G09660.1

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.2

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, microbody; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17207 Blast hits to 17205 proteins in 5456 species: Archae - 235; Bacteria - 12094; Metazoa - 1213; Fungi - 536; Plants - 740; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.3

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 16823 Blast hits to 16821 proteins in 5415 species: Archae - 235; Bacteria - 11979; Metazoa - 1199; Fungi - 507; Plants - 555; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.4

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR