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53-2640-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24494568 [Map]; Strand: w
      • AT5G60890.1 - [+] show detail - myb domain protein 34
        Distance: -123; Region: promoter
    Flanking Genome Sequence: 53-2640-1 - 5-prime edge
    GACTTAGTGG CCTGTGTATA GAAAGATTTA AAGAACGTGT AATCCCAACC 
    ATTCCTCCAT CAAAGATATA TCAGATCATT TCTTTTTGAC AGCAATAATT
    TTTAATCATT TTATCTGTCT CTCTGTTCTT TCTCTNTCCC GCAGTCCCTC
    TCGTAATTTT GCTATATAAG AGCACCTCTA TAATCTGTGT GAGACAGAAT
    TATAAAAAAA AAACATGNNG GCGCNNCCCC GTATNNNNCN GTNGANCNNN
    CGTGAGCCTT CNCCNTCNGC NNNNNGCGAC GGNNGCGNNN TNNNNGNANG
    AANAGANAGG N
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24494452 [Map]; Strand: w
      • AT5G60890.1 - [+] show detail - myb domain protein 34
        Distance: -239; Region: promoter
    Flanking Genome Sequence: 53-2640-1 - 3-prime edge
    ACTAAGTCAC TGTGGGGAAA TGCCACGTGC AGTGTTGTCA TTGGATCAGT 
    TGAGCATCTG TCAGAGTTCG CGGTCACACG GAAATGCATA TACTGATGAG
    TGATGACACT GTTCTGATGC TCTTGTCCGT TTTAGTTTGT TTCTTGCGAG
    ATCAAGGAAC ATTGAGATTT TGGGTAAAAG TTTTTATCGA TTCTAGGAGA
    TACGGTGTTC ACAAAAATTG TTCAGCTAAA ATAATAATTG ATTCATTCAA
    TCAATAATTA ATGCTACTAT CATTATACTA TTGCTATTTG TATTCTTTCA
    AAATAATATT ACTGGCTTTT AATACTAGTG AAGGTTGAAC TATGAGTCCA
    TGACTATGAC ATTATATTTT AAAATGTATC GGATATTTTA TAGCATAGGT
    CTGGAGGATT TGATTTTAAA GGCACAACCT TTTTTCATCT TTAATTTTAT
    AGCTACTATG ATTAAGGGAA GCTAGTATGA TCATTGATTA ACTATTAAAC
    AAGGAAAAAC CATTTAACAA AAAAAAAAAA AANCNNNGGG GTNGGAAAAA
    CCCCNNAAAA TNNTTTNNNG GGGGGTTTNN TTTCCCNAAA AAAAANGNNT
    GGGGGCTNAA AAAANTTTTA ANTTTCCCCN AAGGGTTTNC CCCCTTTTTG
    GGGGGAATAA CCTTTTTTTG GGGGNAAAAT TTTTTNNNAA AAAAAAGGGN
    CCCCAAATNA AAANATTTTT NCCTTTTTTT GGGAANAAAN NC

AT5G60890.1

Model type
Protein coding
Short Description
myb domain protein 34
Curator Summary
Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.
Computational Description
myb domain protein 34 (MYB34); FUNCTIONS IN: DNA binding, transcription activator activity, kinase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tryptophan biosynthetic process, response to jasmonic acid stimulus, defense response to insect, cellular response to sulfur starvation, indole glucosinolate biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR