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53-2659-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23259996 [Map]; Strand: w
      • AT3G62910.1 - [+] show detail - Peptide chain release factor 1
        Distance: 0; Region: exon3 (CDS)
      • AT3G62920.1 - [+] show detail - unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; ...
        Distance: -666; Region: promoter
    Flanking Genome Sequence: 53-2659-1 - 5-prime edge 
    CTCGTCAAGC TCCGACATGG ATTGTGCCAG TTTTTGGTAT TCAGATTGAT 
    TCGAAACAAC ATCTGGGTCA GCTAGTTTCA CCTACAAATC ATTCAAAACT 
    CTTAAGAATG AGATTAAGAA ACAAACCTTA ACCATTAATG GAATAAGTGT 
    AGGAACAAAC CGATAACTCC TTCCATGTCT TCTCAACAGA CTCCATTTTC 
    CTAATGAGGT AAGGTTCCTA AATGTTTCAA CAGACAAAAT CATCGAACAA 
    TTCTGAAACT TTTGAAAAAA AAATCCAACA TTGGGAGAAC TAGAATCACT 
    TACGGCCATA CAAACGAGTC GTCGAGTCCT GCGAGACCGA GAAGGCGGCC 
    ACGAGACTAG ACAAACTCCA GACGGTGACT TTCTCGAACG TAAAGTGAAT 
    GGTGACGAGT GAAGATGAAG GAAGGCTCGA GCCGTTGGAC TCGTCGTCAT 
    CGAGCTATTC ATTGTCTAGA CTCTAGAGAG AGAGGTGGAA GAAGACGAGT 
    GGCGCGGGAG TTGCTGGATA AGGAAGCCTA GTTTAGATGA TGAGACGTGT 
    TTGGCTATTA GGACAAAACT ATCCTCGCCA ATTATAGAAG AAACCCTTTT 
    ATTTATTGGG CCTTTAGCCC ATACTAATTT ACATTCTCGG TTACACCGGN 
    GTAACTTACA CCTGCTAGTA ACTCTATGGG CCTATGGNCC AATATATGTG 
    AAGTCAAACT GATTCGTCGC GAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23259880 [Map]; Strand: w
      • AT3G62910.1 - [+] show detail - Peptide chain release factor 1
        Distance: 0; Region: intron3 (CDS)
      • AT3G62920.1 - [+] show detail - unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; ...
        Distance: -782; Region: promoter
    Flanking Genome Sequence: 53-2659-1 - 3-prime edge 
    TTGACGAGGT ATTTGCACAT TCTTTTAGTG TTCAAAATTT GCAGCTTTTT 
    TCGGGGTTTC TTAACATTGA ATTCAATTTT AGGTTGTAAC AGTCTTCAGA 
    AGATTCAAGG ACTGTGAGAA GCAGTTACCT AGAAAGCAAA GGTCCCTTCA 
    AGTCTCCTCC TTTCTTTTAC TTTGCTTTGA TTCTGTTCCT CGGAAGCTGG 
    TTATGATTTA CTGATTGGTT TATTGCTTCA TC

AT3G62910.1

Model type
Protein coding
Short Description
Peptide chain release factor 1
Curator Summary
Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.
Computational Description
ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62920.1

Model type
Protein coding
Computational Description
unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR