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53-2667-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22396371 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 1327; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1857; Region: intergenic
    Flanking Genome Sequence: 53-2667-1 - 5-prime edge 
    CATGAAAGGA CGGATAACCA CAAAGTAACT AGATAAAAGA ATTAAAAGAA 
    AAATTAACAA ATTAGAATCA GGCAACAAAT ATTTTGTGAC CTAAAATGGG 
    TTTAAACTAT GACTATAAGC TATCGTTTTC TTTCTCTTAA TTTTTTTAAT 
    ATAATTTGTT TGTAATCTTA CATTATATTA TTTAAAACTG ATAACAGAGA 
    AAGAAGAAAA CAAAGGAGAC AAATCACATT GGGTGTGGTT TAAAACAGAG 
    AAGCACAACG AAAAGATGTT TGGTTGGGGC GTGATTAAAG TGTCTCTCTG 
    ACTCAATGCA CCAGTTTCAG CTTCAAGTCT TCTTCATTTA ATTTTATTTT 
    TCTAGTTAAA TGTTTTCGAC TGCTCCTTTT TTTGTTTGAT TTTCCTAACT 
    TCAGTTTGTT TGATTTAATG AAAAAAGAAA CCTCTAATAA TGACTCACTA 
    AAGACAACCA CCGTTATCTC TCAACAAGTC AACATAGAAA AAGTTTCAAT 
    ACAAGATTCT ATTTGGAAAA CCAACTCGTT TGTTAGAAAT TTACATTAGT 
    TATCGAGAAC AAATGTATAT ATATATATAT ATATTAATGA GAAAAAGAAA 
    AAAAAAAAAA AANGGGNNCC CCCCCNTTTN NGGGGAAANT TTNNNNNGGG 
    GGGGGNANNC CGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22396299 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 1255; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1929; Region: intergenic
    Flanking Genome Sequence: 53-2667-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCA 
    TGCAATATCA TTGGTTGCTA AGTGAAAACA AGATTGTAAA TTCACAGTAA 
    ATCTAAAAAC AATTTCCGGG TTTTGGTTGT TTTAACCCGG TTTAGTCTTC 
    CCTAAGAATG AGTGCATTAC CAATCAACAG CAACATAATT GTGAAGTAAG 
    CCATAAGTTG AGCAGACCAA ACTAGTTCAA CTTTCTAATC GTATTTTATT 
    TATTTATTAA TTTTAGTTGA AGATTTGAGT TTGCTTTTAC TTTATACTTT 
    TCATAGGCGA ATATTAGTGA AGGTTAGTGT CAGTCTCAGG ATCTTTGTAC 
    CAACGGCTGG CATCAAATGG CCTCACAAAT TTAGACAGAG AAGATGCATT 
    TAATAAAATT AGATTTTTTA CGATTTAACT CTCCATCTAT TTTTGTCACT 
    CACTATATTT TTCATTCCAG ATTCATGCAA TTTAATGCCT CCAAAATTTG 
    GAAAAATAAA TTATCAGACG AAAATGAATT

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR