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53-2670-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3015503 [Map]; Strand: c
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-2670-1 - 5-prime edge 
    CACCGGAGAC AGAGAGGGAA GCCACACGGT GTTTCTGTTC ACGACGTCGC 
    CGCAAGTACA CGGATCTCCG ATTAAGCAAC TACTAGGATT TGAGAAGATT 
    CGTCTGGGAA AGAGTGAAGA AGCAGGTGGT TAGGTTTAAC AGTCAATGTG 
    TGTAAGGATC TGAGTGTGGT TGATGAGACC GGGAAGAGGA AAATCGCGTT 
    AGGTCATCAT CTTCTCCATG TAGGAAGCTT GAAACACTCT TTGAACATTA 
    GTGTTTGATT CGACGGCTCG TTTTGTTTTT AACTTAAGAT ATTAATTATG 
    GTAATAAAAT GAGATAGCAA TTTTAAAATC TTACAAAAAT AAAAAAATGG 
    TGGTTCAAGC GGGTTACGAG CCAGCGGACC ATAGTGGATT TGTGTGGCGT 
    CGAACCGTTG TCCGTCCACT GCTGAGAGCG GGAGGTAGTC GCTGCTCTGT 
    GAAGCCAGCC TAACGCAATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3015619 [Map]; Strand: c
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-2670-1 - 3-prime edge 
    CTCCGGTGTT CTTTACATTC AAATGAACCT CGAAATCCGA TCCTCCCTCA 
    ACGGCGTTCT CGCAGTGAGG TCCGATCGCG TCCAAAGATT GGCACCTCCG 
    ATGATCGGCA AGGGTGGTTC TCGTCGAGAC TGAGAGAGAC GAGTCTTGGC 
    GCTTTGATTA GCTGATGGTC GAATTTAGTG TAGGTAAGCG CGTCTGCGAA 
    GGCGTATACG GTTTCTCCGG TGTAAAACCT GTAACTCCGA CCCGGATACC 
    CCTTTGATTT GTCGGGTCTC ATGTTCATCT

AT5G09730.1

Model type
Protein coding
Short Description
beta-xylosidase 3
Curator Summary
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9260 Blast hits to 8072 proteins in 1198 species: Archae - 63; Bacteria - 5600; Metazoa - 16; Fungi - 1569; Plants - 515; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).
Link
InterPro Scan - TAIR