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53-2700-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23903795 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -62; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -97; Region: promoter
    Flanking Genome Sequence: 53-2700-1 - 5-prime edge 
    TACTTTCATC CCTGTTTCCA TTAATGTGTG GTTGTGTTTA AAGCAAGGAC 
    ACGATTGTAA ATTGACGTTT TAGGGTTTTT TGTTTGTGTT TGGCAGAGTA 
    AACTATTTAT AGCGAGACAC CACCTTACTC TTCCGCCATT TGTTAAACCT 
    CTAAAGCTCG TGAGAACCAA NNNCTTGAAT CAAACGCTTT TGAAATCATG 
    GGTACTTTTT CAATTCCGTT TCTTTCTCGT TCGATTTCTG GCAAAGATAT 
    AACCTTTCTA GCATCAATGT CGAGAAATTC TTCTTCAATA GTGGTGTATT 
    GATGACTTGT TGATTCTCTG TTTTGCAGGT ATCTCTCGTG ATTCANTTCA 
    CAAGAGACGT GCCACTGGTG GTAAGCAAAA GATGTGGAGG AAGAAGCGAA 
    AGTAAGCTTT TTAATCTTCC CCTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23903897 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -164; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2700-1 - 3-prime edge 
    AATGGAAAGA ATCGATTTTT AAAAAATAAT ATCAGGAGTC AAAATCTCGA 
    AGATGAGAGA TAAGCGACCA AAATTAGCGG GAGAATCCTC ACTTATCTCA 
    CTCCGATCCG ATCATGGCTT TCGCTGTCTC GGTTCAGTCA CATTTCGCAA 
    TCAGAGCGTT AAAACGAGAC CACTTCAAGA ACCCTTCTCC TCGTACTTTC 
    T

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR