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53-2705-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27034584 [Map]; Strand: c
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2705-1 - 5-prime edge 
    TGACTCGCCT CGGGTCTCGA GCCAGTGTGT AGCCAAGCCT ACGGTAGCAA 
    AAACTGGGAT CTCCTCACGC TCTCTCTTCA CCGTATGGTC GTGATTCTCT 
    TAATGGCCTC TCTGCCCATA AGCCTCCTTT GGATCAACCT TGGACCCATC 
    ATGCTTTTCA TGGGTCAAAA CCCGGAGATA ACCGCTACAG CGGCTGAATA 
    TTGTCTCTAC GCGCTTCCTG ATCTTTTGAC CAATACTCTC CTTCAGCCGT 
    TACGTGTTCA TCTCACCTCG AC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27034704 [Map]; Strand: c
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2705-1 - 3-prime edge 
    ATCCAACCAT AACAGAGTAT CCTGTGATGT TGGTGAATCC GATGGAGAGA 
    GCTCCTCCGG CTAACTCGAG GCTACCGAGA CGGCCGAGGA AGAGAACAGA 
    CACGACGGCG CGCACGTAGA CAAGACAGT

AT1G71870.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).
Link
InterPro Scan - TAIR