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53-2710-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 14894676 [Map]; Strand: c
      • AT1G40075.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2710-1 - 5-prime edge 
    GTTGGAGAGA TACTTTCCAC CATCCCTTTT TGACATTATG TTTCATCTGC 
    CAATTCATTT AGCAAGAGAA GCACGCTTGG GTGGCCCTAT ACACTTCAGA 
    TGGATGTATC CGTTTGAGAG GTATGCTATT AGTATGATGT CTCTTTAAAT 
    TAGTATGATG TCTTTTTAAA TTATGTCTAT ATTAACATTC TGTTTCCATT 
    GTAGGTATAT GAAGACCCTT AAGGCTTATG TGAAGAATTT TGCAAGACCA 
    GAAGCTTGTA TGGCTGAAGG CTATTTGGCT GGTGAATGCA TATCATTTTG 
    TTTGGAGTTT CTCAAGAAAT CAGTTCCAGT TCAGGAAACA ATTACTAGCA 
    ATGAAGATGT TGAGACAGAT GGTAATGTCT GTAACAGCCC GGNCCGNCAA 
    CCACCCNGCC CNTTATANNN NNNNNAAAAN NG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 364095 [Map]; Strand: c
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -404; Region: promoter
    Flanking Genome Sequence: 53-2710-1 - 3-prime edge 
    TATACGTGAC TTTATAAATT TCATAAAGGA AATGATTTAT TCAAATTGCA 
    GGTAAGCATT GATCGAAGTT GAGTTACATA TAAAACAATA AGGAGTTATT 
    ACTTATTAGA AGCGATCAAT GATCCTCATA GCAGCAGTTA GAGAGTTGGG 
    CATAGATATT GATTTGACCA AATAGTTGGG GAGACGTGAA CTTGACACGT 
    TTGAGATTGA ACATACATCT CAAAGGAAAG CCAAGCGCAA GCTTTGTCGA 
    TTTGTTGGTT TTATCATAAT CACCGGTTTT CAAACTTGTT TTGGCTTCCG 
    ACAGTATTGT AGATGCATTC GTCGACAAGT CTTTTTTGCA AATCTCCAGA 
    GCTGTTTTCA CTTCACCTTT ATCTTTCTTT GACGATAAAT TCGTTATGTT 
    ACTACACAAA TGAAAAAATT GATATATTAG AGGATATTTC TGTATATTGG 
    TTATAATTTG TAAGTGAAAA CTTGCTTGGT GATAT

AT1G40075.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 4.1e-155 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR

AT4G00870.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR