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53-2716-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051555 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-2716-1 - 5-prime edge 
    CTTNGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC AATTTGTTTT TATAGGCAAA GACGGAGAGT 
    CTATTTTTTG AGCAATCAGA TCGCATAATA GATCTAACGG CTGAGATATC 
    GATCCGTGTG TACAATAAAA TGATGTATAA ACCGTCGATC TGTTTTAATC 
    GACGGTTCAT ATTAGTGATC CGCGTGATGG CAGTGATAGC CACTAAGAAT 
    CGTCTTTTGT TTTACATGTG GCGCCACAAA TTAGGGTAAT GAAGCGGCAA 
    TATTTTGGAA CTCGGAAAAT AAAATTGCGC CATCACATTA TTTGAAAATT 
    TTCACATGCT TTTATTTTAA AAACCCACGA ATTACAAGTT ACAACCGAAA 
    AAGATTTATA ACATAGTGAT TTATACTAAT TTTGTAGTAG CTTAATGTAT 
    ATTGATACTG GAAAAACAAT GACAATCATA TGTTAGTATT ATCAAGTTAT 
    CGTATTGATA TTGATATTGG AACATACAAT GGGTATTGCC TTCTTTCGAC 
    CATAAATATC ACCAAATTTA CAAAGTTTGT GTATACCAAG TTATCAATTG 
    TAAATGGGAT GTCAACATTT TAATTTCCCT TTGAGAAACT ATAGACCACA 
    AGAACACACT TCAATAGATA AAGTAACTAT TTACATAAGA GGTTTTAAAA 
    TCACATTAAC AAAAATAATT ACCAACCGGC ACTCACAAAT ACAAACAGAG 
    CACACGACAT GTCAAAGCCA CAAGTNAATT CGTTGAGTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23475880 [Map]; Strand: w
      • AT5G57990.1 - [+] show detail - ubiquitin-specific protease 23
        Distance: -1776; Region: intergenic
      • AT5G58000.1 - [+] show detail - Reticulon family protein
        Distance: -1531; Region: intergenic
    Flanking Genome Sequence: 53-2716-1 - 3-prime edge 
    ATTGTACTAG CAAACACTCA ATTAACGTTA AATGCATGCT TGGTGTGTTG 
    GATAAACTAC CCTACCTAAT TAACAGCTAT AACGGATCCT GGTCTCCTTA 
    ATCTAAATGT GAATTTGCAA TTGCAGTCTG TGTGCGTGTC TAATTAGTAA 
    CCACACTAAT TAATTACATA GTAGTACACT AATCAAGTTT AGACCCCAAT 
    GAAAAATTGG AACACGAATC GGAGTTGGAT TGGGATTGCT TCGACGGCAC 
    GTGGTCGAGT AAGAGGGCAC GTGACTCATG GCACTTCTCC CTATGCACCC 
    GCTTCTTTGT TTTCCTCCCC TCTCTCTGTC TTTCTTATTT TCATGCACAT 
    TCTCTCTCTC TCTCTTTATA GACTCTTTTT TAATACTACA AAACACATTT 
    TGCTTTCTCC TAGTATATCT TCTTTTGCGA ATACAATACG TTATTAAATT 
    TGGAGTGAGC CAAATCACCG TGGCAACGAA CATATTTGTT TTTCTTTTAT 
    AAAACAAAAN

AT5G57990.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 23
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58000.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 1128 Blast hits to 1113 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 759; Fungi - 49; Plants - 88; Viruses - 4; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR