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53-2717-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23904243 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -510; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2717-1 - 5-prime edge 
    CNTGGATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CTTCACCTAA CCATGAACCA AAACCGGAAA 
    AATCAAAACT TTTGAATTTT TTTTAGAAGA AATCAAAATC AGAGAAAATT 
    GCTTTTCACC TGGAGTTTAT GTCTGTATCT AGTAGTGACT AAACCCGGTT 
    TGGAAACGAA GCAAGTACNG TTCCTTTAAA CTAAGGTAAG ACGAGTCAGG 
    CCTCGATTTA AAACACGAGC AGAAAGTACG AGGAGAAGGG TTCTTGAAGT 
    GGTCTCGTTT TAACGCTCTG ATTGCGAAAT GTGACTGAAC CGAGACAGCG 
    AAAGCCATGA TCGGATCGGA GTGAGATAAG TGAGGATTCT CCCGCTAATT 
    TTGGTCGCTT ATCTCTCATC TTCGAGATTT TGACTCCTGA TATTATTTTT 
    TAAAAATCGA TTCTTTCCAT TAATGTGTGG TTGTGTTTAA AGCAAGGACA 
    CGATTGTAAA TTGACGTTTT AGGGTTTTTT GTTTGTGTTT GGCAGAGTAA 
    ACTATTTATA GCGAGACACC ACTTACTCTT CCGCCATTTG TTAAACCTCT 
    AAAGCTCGTG AGAACCAAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7040919 [Map]; Strand: w
      • AT1G20330.1 - [+] show detail - sterol methyltransferase 2
        Distance: -760; Region: promoter
    Flanking Genome Sequence: 53-2717-1 - 3-prime edge 
    GCTAGAACCG AAGGGAGGAG TTGGCAAGAT TCTTGATGCT AATTTTGAAT 
    CTGGACAACT TTAGATGGAA TGGTTTAATT TATCATAATC TACATTTTTA 
    TTCGTAAAGT AAAATAAAGA TTAATGCTNG GTTTGAACAT ACGNGTAGAA 
    TCACATGACA CTTTGCATAA TCTAATTTTT GTAAGTTTAT GAGAGAAGCA 
    GATTGTATGT ACTCTTCCTC CACCACCACA CGTGATTCCT TCAAAGACGG 
    CCATACTTGA AATTTGGCGT TACACACCCT CACTCTAGGG ACCTCACTTT 
    TCTCTCCATC CATTTCATTT ATTATTATTA TGGAACAATG CTTAATCTTT 
    TTGGTAAAAG AGTAAAAGAT TAGTATTGAA AATTCCAATA AATGTCTTTT 
    AATGCAAAAT NTATTTCCAA ACGTTTAGAT ATAACTTGTT TGACCAAATA 
    TC

AT1G20330.1

Model type
Protein coding
Short Description
sterol methyltransferase 2
Curator Summary
Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.
Computational Description
sterol methyltransferase 2 (SMT2); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: xylem and phloem pattern formation, negative regulation of DNA endoreduplication, multidimensional cell growth, sterol biosynthetic process, pattern specification process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1); Has 13231 Blast hits to 13223 proteins in 2296 species: Archae - 440; Bacteria - 9200; Metazoa - 162; Fungi - 455; Plants - 664; Viruses - 0; Other Eukaryotes - 2310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR