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53-2718-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 364021 [Map]; Strand: c
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: 53-2718-1 - 5-prime edge 
    CNGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    ACAAATTGTT GTAGCTCTCA TGTTTTTTTT TNCTTTNCAA ATTNGCCAAA 
    ANAAGTTTNC GTTGGACCCA TCNTNCAATA TAAANCAAAA GGATATATGG 
    CCTTTTTTTT TTTTTTTNGG GNAAAAAANN ANNNTTNNNT TTTTTNNNAA 
    ANGGGGNCCC CCCNNCCAAA AAANGGGGNN TTTTNANCCC NAAANNGGNN 
    AAAANNNGNN NTTTTNCCNG GGNNNNCCCC CCCCCTNGGG GNANNTTTNN 
    AAAAACCTTT TNTCCCNAAA AANNNNNANN NAAAANNNGN NTTCCCCCCN 
    AAAAAACCCC CNNNNTTNNN AANAAAAAAA TTTTNTNCCC CNTTCCCCCN 
    NGNTTTTNNN NCCCCCNAAA ANTNTTTNGG GGGGGGNCCC CGGGAAAAAA 
    AGGNNAAANN CNCCNTNNNC CCCNAAAGGG NCCCNTTTTN NNNNNTTTTT 
    NNNNNAAAAA ACCCCGGGGN NNANNGGGNC CCNNNNCCCC CNGGGNTNNN 
    CCCCCNNNAA AAANCCCNGG GNGGGGGGGN AANCCCCCCC CCCCCNGGGG 
    GNTTTTTTTT TTTTTGGGNA AAAANNNNNT NNNTAANNAC CNCCCCNNCC 
    CNCCTGGGGG GGGGGGGGGG GGCCTTTNGG GGNNANNAAA AAAAAACNNT 
    NCCCAAAAAA GGGGGCCTTT NCCNCCCCCC CNNGGGGGNN NNAAAAAAAA 
    NNCNAAAATT NTTTAAAAAC CCCCCAAAAA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 14894792 [Map]; Strand: c
      • AT1G40075.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2718-1 - 3-prime edge 
    TCTCCAACTG GCACATTGTT TCAACAAACT CTGATTCCAA GGTAACCTGC 
    TGCTCTGGAT CTATTACACG TTGGCACAGC CTATTGAAGT AATTGCAGAT 
    ACGATTCACT GCAATCCGAG ATCCTCTAGG CAGTAAACCT CTTAATGCCA 
    CATGTAACAG ATTCTGTAGT AGTACGTGAT GGTCATGTGA CTTCATACTA 
    CCAATGTTGG GAGGATCTAC TGACACACAG TTGGATATGT TGGCACAATA 
    TCCATCCGGG CCTCTGAATT TGGCTAACCT TCTGTAGTAC TTTCA

AT1G40075.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 4.1e-155 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR

AT4G00870.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR