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53-2728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051798 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2728-1 - 5-prime edge 
    GTGTAAGTGA CAGCATCACG AATCACGTTC TCGAGAAAGA TCTTGAGAAC 
    GCCACGAGTC TCTTCGTAAA TCAAACCACT GATACGCTTG ACTCCACCTC 
    TACGAGCCAA TCTTCGGATC GCAGGCNTTG GTGATTCCTT GGATGTTGTC 
    TCTCAGAACC TTCCTGTGAC GCTTGGCTCC TCCTTTACCC AAACCTTTTC 
    CTCCCTTTCC ACGACCCGAC ATTTTTTCAG CGAAGATTCA GTTTTTCTCG 
    AGAGAAATTG ATGTTAGTAG AAGAAGAAGA ACGGTTCAGA GTAGATTTGG 
    GTGAGAAAGA TGTGAAATTG TTTTTATAGG CAAAGACGGA GAGTCTATTT 
    TTTGAGCAAT CAGATCGCAT AATAGATCTA ACGGCTGAGA TATCGATCCG 
    TGTGTACAAT AAAATGATGT ATAAACCGTC GATCTGTTTT AATCGACGGT 
    TCATATTAGT GATCCGCGTG ATGGCAGTGA TAGCCACTAA GAATCGTCTT 
    TTGTTTTACA TGTGGCGCCA CAAATTAGGG TAATGAAGCG GCAATATTTT 
    GGAACTCGGA AAATAAAATT GCGCCATCAC ATTATTTGAA AATTTTCACA 
    TGCTTTTATT TTAAAAACCC ACGAATTACA AGTTACAACC GAAAAAGATT 
    TATAACATAG TGATTTATAC TAATTTTGTA GTAGCTTAAT GTATATTGAT 
    ACTGGAAAAA CAATGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051914 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2728-1 - 3-prime edge 
    ACTTACACCG AGCACGCTAG GAGGAAAACT GTGACCGCCA TGGATGTTGT 
    CTACGCTCTC AAGAGGCAAG GAAGGACTCT TTACGGATTC NGTGGTTAAT 
    TAGAGTTTTT CAGATCCGCG TTTGTGTTTT CTGGGTTTCT CACTTAAGCG 
    TCTGCAGTTT NACTTTTGTA TTGGGTTTGG CGTTTAGTAN TTTGCGGTAG 
    CGTTCTTGTT ATGTGTAATT ACAGCTATTT CTTCTTGCTT CAGCAGTTTC

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR