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53-2730-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26519462 [Map]; Strand: c
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: -220; Region: promoter
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: -220; Region: promoter
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: -308; Region: promoter
    Flanking Genome Sequence: 53-2730-1 - 5-prime edge
    TTAGTACCGC CACAAAGAAA AGGATAGATA TTTTGCTTTC CAGCACCCTG 
    TCATGGGATT GATATGAACA CGTACTTGGT ATCGACATGA AAGCTCAAAA
    ATAAATTCAA TCCGATTCCT TTAGTGATAT CAGAAGTTCG TTTTAAATAC
    GAACACGTAT GGCGAAACAC CACGCCGACA TTTTCTGCTG CTGCCACGCG
    TCACTTTCCA AATATTGATT CATTAAACTA ATAGTTGATC CATATCCGAA
    ACCGGACTAT AAAACTATCT TCAATGCGTT AACGAATCTT CATCGATCAA
    ACTCATCAAA GTCTAATATC ACAAAGAAAG AGTTTTTTTA ACTAGCTTAG
    CTCAAAGTGT TTGCTTAAGA CAAGAAGAAC ATGGCGTCTT ACCAGAACCG
    TCCAGGAGGT CAGGCCACTG ACGAGTACGG AAACCCGATC CAGCAGCAGT
    ATGACGAGTA CGGAAATCCG ATGGGAGGAG GAGGATACGG AACTGGTGGT
    GGTGGAGGAG CTACAGGTGG CCAAGGATAC GGAACAGGTG GCCAAGGGTA
    CGGATCAGGT GGCCAAGGGT ACGGAACCGG TGGCCAAGGA TACGGAACCG
    GGACCGGGAC TGAAGGCTTT GGAACTGGCG GAGGAGCTAG GCACCACGGC
    CAAGAGCAAC TCCACAAGGA AAGTGGTGGT GGCTTGGGAG GAATGCTTCA
    CCGCTCCGGA TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26519578 [Map]; Strand: c
      • AT5G66400.2 - [+] show detail - Dehydrin family protein
        Distance: -336; Region: promoter
      • AT5G66400.1 - [+] show detail - Dehydrin family protein
        Distance: -336; Region: promoter
      • AT5G66410.1 - [+] show detail - phosducin-like protein 3 homolog
        Distance: -192; Region: promoter
    Flanking Genome Sequence: 53-2730-1 - 3-prime edge
    GGTACTAACA TTATCGTAGC TAACAGGACA CGTAATGCTC CTCCTCGAAA 
    GCGATGCGTC GTGTTAATGA TTTTCATACA CACGTACATC GTCGTTGATT
    GGGTGAATTT GAAGAAACTT GGCTGGGTCT GAAATATTTG GGCTCATGTG
    TGGGCCGTAA ATCACTTACT AATTAGCCCA TGGACTAAAA CTAAGCCCTA
    ACAAAATTTA CTCAACTTTT ACCAAACGCC GCGTTTAGAT CGTTGGTGTT
    CATTGTTTTC AGTTGTCGGG GAGTTTCTCC TCTCTGCACC AGATTTCAAA
    TCCTTGTTTA CAATCTCTTC TCTGGCTATC TTAGAGGGAT TTTTGATTGA
    GATTTTAAAA TTTTCTGAGT TGGATTAGTT GGTTGGTAAA GAGATGGATC

AT5G66400.1

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66400.2

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
Computational Description
RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 55408 Blast hits to 21272 proteins in 1590 species: Archae - 46; Bacteria - 19188; Metazoa - 16568; Fungi - 3087; Plants - 7219; Viruses - 590; Other Eukaryotes - 8710 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66410.1

Model type
Protein coding
Short Description
phosducin-like protein 3 homolog
Curator Summary
Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.
Computational Description
phosducin-like protein 3 homolog (PLP3b); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: phosducin-like protein 3 homolog (TAIR:AT3G50960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR