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53-2731-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5543824 [Map]; Strand: c
      • AT2G13363.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1341; Region: intergenic
      • AT2G13370.1 - [+] show detail - chromatin remodeling 5
        Distance: 357; Region: intergenic
    Flanking Genome Sequence: 53-2731-1 - 5-prime edge 
    CTAAGAGGAG TAAGTAGAAG AGTTAGTGAG GATAATCATA TTCGTCAACA 
    TGCAAAAGAA GAATACCAAG TTAACCAGTT CCAAACCATT ATATCAGTCA 
    CGCCAATCAT GTCATACACA TAATTCATAC CGATCATATC ATTTACGTTG 
    GTCACATCAT TCGCATCGAT ACAACGAAAC ATGCATAGAT TCCCAATACA 
    TAACACTCAA ACTAATAATT TTCAAGATTA AATTACAAAC GATATATATT 
    GATGCAACTT AAATAACAAA CGTAAAAAAA AAACCTATNC NCCTATTTNG 
    CTNCAACCGA ATTTCACATT NGANGACAAA AATAAAANAT CCGNCATCTT 
    TANAAATATC TNTACTGTNT TTGACCGACN CTTTTNTNTC CGGAANGCNA 
    AGCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5543890 [Map]; Strand: c
      • AT2G13363.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1407; Region: intergenic
      • AT2G13370.1 - [+] show detail - chromatin remodeling 5
        Distance: 291; Region: intergenic
    Flanking Genome Sequence: 53-2731-1 - 3-prime edge 
    TTTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    CCTCTACAGA TTGTGCAAGT GAGCATTGTC GAAGCATAAA AGGGTTTAGG 
    ACGTGCAACA ATGGATTTAG ACCAGTTTGA CACTTTTGAT CGGGACGTTA 
    TAAAACCTAT AAGGTTTTCA GTCTTTTCAA TTGTTCAAAA TTGATCTTAT 
    TGATTGAAAT GGTGCCTTCG AGCCAAAGTG TCGA

AT2G13363.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G13370.1

Model type
Protein coding
Short Description
chromatin remodeling 5
Computational Description
chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink).
Link
InterPro Scan - TAIR