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53-2755-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9507678 [Map]; Strand: c
      • AT4G16892.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 53-2755-1 - 5-prime edge 
    GGGCTTAGAG ACAGACTATT TAATAGAATC GATCGTTTGA TTTATAATGC 
    AGATGACATC GGGAACATCT GAAGAATATA TCAACTTACC CTGTGTCCAA 
    AGTGTAGCAG GACACAAGCN TTGACCGCTC TAAATATGGA GCTTTCGTTA 
    GGGCAGGGAG AAGCATCATC AGTTTCTTCT TATTCATCTT CTTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9543890 [Map]; Strand: c
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2755-1 - 3-prime edge 
    CACACACAAG TTATATAGCA TACGAAACAA GATACCAGTT TCGAAGATCT 
    TCTCCGGCCA TTTTTGCTAC CGCTGCTAGA GCACTTATCC ATCTTTGTTT 
    ATCATCCTCT GTTTTGTCCT TGCACAGTAT TTTCGAAGGC CTGGCCAAAT 
    TCTCCGGCCT GTTTACTAAC TTCCGAAGTA TTAACGTTGT AGAAAATCGG 
    AATCACCATT TGATCCAATT CCTTATAACA CTTGTGGATC TCAACCAGTT 
    CATTCAAGCA CCAGGTGGAT GAAGCATATT TCTTAGAGAA GACGACGATT 
    GCGATCCTTG ATTCTCTAAT CGCCAATAAA AGCGCAGGGG CTATCGGGCG 
    GCTTCTCTCG ATCCCATGAT CCACGAATGT GTTGATTGAC CTGCGCTCGA 
    GCGCCTCGAG AAGATGGCTG AGGAACGTCT TGCGAACATC TTGCCCACTG 
    AAGCTTGGGA AAACGTCGTA TCTCCGGCTG CCATAAGAAG AAGCCGTCGC 
    CATGGAAGAT GATGAGAGAG AAAAGAAAAA GATCAGCAAT GCATATTGAT 
    TAGTGAGAGA GAGAGAGAGA AAAGAGGAGA AAC

AT4G16892.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR