1. Home
  2. Mutant Lines
  3. 53-2764-1

53-2764-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19459249 [Map]; Strand: c
      • AT1G52240.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 11
        Distance: 0; Region: exon2 (5UTR)
      • AT1G52240.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 11
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 53-2764-1 - 5-prime edge 
    GATCCAAAGC TTCCCTTGTC TTTAGTTCTC ATCAAAAAAA TTGAAAAACG 
    TTTGGAGTTA TTGAGAGAGA GAGAGAGAGA AAGATGTNGG ANGGCAAAGC 
    AGTGGNGGAA G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19459373 [Map]; Strand: c
      • AT1G52240.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 11
        Distance: 0; Region: intron1 (5UTR)
      • AT1G52240.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 11
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-2764-1 - 3-prime edge 
    TTTATAGGCT CCTAAAAGAC ACAAAATGAA AAAAAGATTC CTTCAATATC 
    TAATCTTTAT CAAGAAAACC CATACAAAGA TAAATAATGT CTCCTCTTTG 
    AGGAAAAATA TGGGAAAATG TGCCTAACCT TTTTCTTTGT CGTCTTCATC 
    TACCTCGNNN GNNG

AT1G52240.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 11
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
Computational Description
RHO guanyl-nucleotide exchange factor 11 (ROPGEF11); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 13 (TAIR:AT3G16130.1); Has 1099 Blast hits to 1098 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 40; Plants - 487; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52240.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 11
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
Computational Description
RHO guanyl-nucleotide exchange factor 11 (ROPGEF11); CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT3G16120.1); Has 1254 Blast hits to 1252 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 103; Plants - 255; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Link
InterPro Scan - TAIR