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Mutant Lines
53-2767-1

53-2767-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 2994018 [Map]; Strand: c
  - AT5G09650.1 - [+] show detail - pyrophosphorylase 6
    Distance: -805; Region: promoter
  - AT5G09660.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: exon6 (CDS)
  - AT5G09660.2 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: exon5 (CDS)
  - AT5G09660.3 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: exon5 (CDS)
  - AT5G09660.4 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: exon6 (CDS)
Flanking Genome Sequence: 53-2767-1 - 5-prime edge
```
GTGAAATGTA CTACTACTAT AGGCATATGC TGCAGCCAAG TTTGCAGATG 
CTTGCCTTCG CGGGTTAAGA GGAGATGCGA ATGTCGTAGA ATGCTCTTTT 
GTTGCTTCAC AGGTGAATCT TGAAAACTCT TTCACTCTCT TTCATTGTTT 
CAACGGTTTT AACTTGAAAT GGCAATTGAC CACAGGTGAC AGAATTAGCT 
TTCTTTGCAA CAAAAGTGCG CCTTGGCCGT ACAGGAGCAG AGGAAGTGTA 
TCAGCTTGGA CCCTTAAACG AATACGAAAG GTCAGAAAAA ACATAACTCA 
TCTCTTTCAA AATACTTATC TCAGAGAGAT AGAAAGAGAG TTCTCAAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 2994134 [Map]; Strand: c
  - AT5G09650.1 - [+] show detail - pyrophosphorylase 6
    Distance: -921; Region: promoter
  - AT5G09660.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron5 (CDS)
  - AT5G09660.2 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron4 (CDS)
  - AT5G09660.3 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron4 (CDS)
  - AT5G09660.4 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    Distance: 0; Region: intron5 (CDS)
Flanking Genome Sequence: 53-2767-1 - 3-prime edge
```
CATTTCACAT GNATTCAGTA CACTGTTCCA GAGAAATAAA CAGGTGTAAT 
GATGATGTAT TAAAGTGATT TGGTTTGGTT TTACCATTGA AAGTGTTGCA 
GAACCAGCTC CAGCTTTTGC CTCCACAACC TTCAGTTCCA CCATTTTGAA 
TCCGGTTTGT CAGGTACTCA ATTTCTTGAG GTGTGAAGCT GCTAGGAGGT 
TTAACCTGAG GAAAAAGGAT TATGCAAAAA CAATCAGTTA GCAGAGAAGC 
TAATGTAATG GAAATGAACC TTTCGTC
```

AT5G09650.1

Model type: Protein coding
Short Description: pyrophosphorylase 6
Curator Summary: Encodes a protein with inorganic pyrophosphatase activity.
Computational Description: pyrophosphorylase 6 (PPa6); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 5 (TAIR:AT4G01480.1); Has 4681 Blast hits to 4677 proteins in 1304 species: Archae - 167; Bacteria - 3164; Metazoa - 258; Fungi - 287; Plants - 274; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.1

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.2

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, microbody; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17207 Blast hits to 17205 proteins in 5456 species: Archae - 235; Bacteria - 12094; Metazoa - 1213; Fungi - 536; Plants - 740; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.3

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 16823 Blast hits to 16821 proteins in 5415 species: Archae - 235; Bacteria - 11979; Metazoa - 1199; Fungi - 507; Plants - 555; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.4

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR