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53-2774-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27032982 [Map]; Strand: w
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2774-1 - 5-prime edge 
    CATTCAATGC TCCTACTACA AACGCGCAAG CTAGAGCCAC GTTCGCGGCT 
    AGTCTGGCCT TGTAAGGTCT ACCTGCACCG AGCTCGTTCC CAACCTGAGA 
    AAATCAATGA AACCAAATCT TAAAAAAGTT ATTGAAGCCA AACTTTTGTC 
    ACGTGTAAAG GAAAGATAAG GACATCAATG AGGTTGAACA GTATCATGAG 
    ATTGGCAACA ATAAAATAGA CCACACTTGA CTACTCTCTT TTCAACCACT 
    TTTTTATATA TTTTTATTTT TAGGTATGTT AACGTCCAAT CACATACCAC 
    GGAGTGACCT ATTAATGGAA GTTGATGTAA CATTTTCCCA TTACATTGCA 
    CGTTTTTATC ATCTCTTTTC TTCTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27032866 [Map]; Strand: w
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2774-1 - 3-prime edge 
    ATTGAATGTG GCTTGGACGG TTATTCTAAA AGAGCGTTGG GCTGGACTAT 
    TCACTGGCTA TGAGCCACTC AAGGTCTTGG TTGCTTCGGT TATGCCAATT 
    GTCGGGCTAT GCGAGCTAGG GAATTGTCCA CAGACCACGG GCCTGCAGGG 
    ATTCTTAGAG GGACAGGTCG GCCTGCGGTT GGGGCACATG TGAATCTCGG 
    GTCGTTTTAT TTCGTTGGGA CTCCCGTGGC AGTTGGACTA GCGTTTTGGT 
    TGAAAATTGG GTTTAGTGGG TTGTGGTTTG GGTTGCTTTC

AT1G71870.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).
Link
InterPro Scan - TAIR