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53-2777-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24202870 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2777-1 - 3-prime edge 
    AAATGAGTCC AAGATGTTTG CAATGTTGCT TCCGTGAGAT CTACGCAAGA 
    GACGGATAAA AGGCATGAGC TTCTGCACCA AACCCCAAAA CAGATCCATC 
    CTAGACATCT TGGTGAATCT CAGAGCCTTG ACCACCACGA AATTCCCAAA 
    TTCATCTCTC T

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR