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53-2781-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91004 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2781-1 - 5-prime edge 
    CTTTTGGGCA AAGTTATGTC TTTATATTAA ATGTCGTGTC TATGAGTCTA 
    TATTTATGTG ATATAGAACA AGCTTATCTT TTGATTTACA CTTTTAGTAA 
    TAGTAGTTTG TTAAGAAAAC ATGCATAAAG CATAATTCTA TGTGTGTGTA 
    TTTCACCTTC ACATATAGCA TATATATGAA AACTTCTCTC TATTTCCTAG 
    TTAAAATCTC TACAGTCGTA GTTAATTGGC TAGGATTAAG GAAGTTAAGC 
    GATCATTTAG CACATATGTA TTGTGAAGTT TTGTTGAATG TTTACAAGGT 
    TTGTTTCCAA GTGATTGAGA TGACAAATCT TCCTCTGTTC GCAACAACCA 
    CGTTGTTTTA CACTTATTCC CAAGCATCAT TTTTTTTTTG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90888 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2781-1 - 3-prime edge 
    CCCAAAAGGC AAAGGCCATG AACCCAGTTG TAAAATTTTA GATTTTTAAA 
    ACTCTTATTT TAATGTAGAG TTGGTTTTCG ATCATGGCAA AAACAAAAAA 
    TATTCATCCT TAAAAGAACA AATCGGAATG AATTAAAAAA AAAAATCGAT 
    NCNTAANAAA GGGTAATTTG CNTCATTGCN TGANGGGATN TGANCCTANA 
    AATGNCAATC AGAGGANATC CNTANAANGG GAAAAAGTCC TTANCTTTGT 
    AGTTTAATTG ANCATTAAGT CAAAANGAAA AATCTCNTTT AAAAAAAAAA 
    NNTTNNAAAC CCCATTTTTT TTNAAAAAAA AAAAAAANNT TAAAACCTTN 
    TTNCCTTAAA AANNGTTTAA ANNAAANNGN NCNCCGGGCC ANTTTNAANC 
    CNGNNANNNN CNTTAAACNN GNGGCATTTC CCCNNCNNAA ANGGCCCNAN 
    NCTTTTATTN AACCNTTTNN AAAAAAANAT TNACCCTNTN NNTAAAAAAA 
    ANCANTNNNA AAANCCCCCC CNNAANTGGG GNNTTTNAAN NAACNTTGAC 
    CCNNAAACCA ANTNNAANCN CCGGNNTTNG GNCTTTTTTC CNCGGAANCT 
    NGGGGGNGGA TTTGGGAANC TTTNNTCCNT CCAAACCCCT TGGAANCCCC 
    CCNAAAGGGC CCCCCTCTTT TTCNGGGTCC AANTNGGGGC CNAAAATNCN 
    CCNNNNACCC NTTTNTTTTT AAAAAACTTG CCCCNCCCC

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR