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53-2787-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78119 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2787-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC GACCGGTAAT ACGGCTGCTG GTTCTGAGCA 
    GCAATCGGAT CGCCGTTGAG ACCTGCTCTA GAACTAGAAG GAGGAGGAGG 
    CATAGTAAGT GAAAGCAGGA AGCTCCCTCT CCCTTTTCAC TCTTCTTCTG 
    TAATAGCGGT GTTGAAATTA TACACAACAA GAGAGAGAGA CCCTGTTTCC 
    GTGTCTGGAC TCTAGTATTA TTGACAAATT AATGTTTCAC AATTTTAACC 
    ACCAATAAAA ATATCAATAA TGTAATTTAC AGCAATTTTA GGCAAATCTC 
    ACACTCAGAC AAGGGTTAGA GATGACTCAA AAAATGTTGG ATCTGATATT 
    AAAAAAACAA ACAAATACAA ACACACAGTT ACTATCCTTT AGTTACATCA 
    TATAAATGTA TTACGTCGTT GCTTTGTGCT ATATAGCTGA CCTCTTGCTG 
    ATATTTATAT TTTCGTCAAC TCTTGATCAA ACACAGATGC CACGTCGTTT 
    CTATACTGAC TCTCCTCACT CTCTTTTATC TTCTTCAACA TCTTCTTCCC 
    TGTCCGACTC CGCATTCTTC TCTTGCTTAA CTAAGCTAAT ATCACCATCT 
    TGCTTCCCCC CTGTCAGAGA TTGAGCTTCC TCGTTTTCTT CATCCACGTC 
    TCCCGAATAT GCATATCTGT CCATCATTAG TTTCATATTA GCATCCCTAT 
    CACACCCAGG AACACCAAAA TTGGACCACT ACATAAGAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 78169 [Map]; Strand: c
      • AT2G01080.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2787-1 - 3-prime edge 
    GGAGCTACTC ATCGTCGTCG TCGGCGTCGC TGAAGGGATG CTGCTGCTGC 
    TTGTTCTTGC TGTTCGCGTT CCTGGCGCTG CTGGTACTGG CGGTGGTGCT 
    CATCGTAATA CTGGCGGTGA AGCCGAAGAA GCCGCAGTTC GATCTGCAGC 
    AAGTGGCAGT GGTGTACATG GGGATCTCCA ACCCAAGCGC TGTTCTGGAT 
    CCAACCACCG CCTCCCTCTC CCTCACCATC CGGATGCTCT TCACCGCCGT 
    CAACCCAAAC AAGGTCGGAA TCAGGTACGG TGAGTCCAGC TTCACGGTCA 
    TGTACAAAGG CATGCCACTG GGGAGGGCGA CGGTGCCTGG ATTCTACCAG 
    GATGCGCACA GTACGAAGAA CGTTGAGGCC ACCATCTCCG TCGACAGAGT 
    CAATCTTATG CAAGCCCACG CCGCCGATCT CGTCAGAGAT GCTTCCTTAA 
    ACGACCGAGT GGAGCTCACA GTCCGCGGAG ACGTGGGGGC TAAGATCCGA 
    GTCATGAATT TCGATTCACC GGGTGTTCAG GTTCTTTCTC

AT2G01080.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR