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53-2789-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21607380 [Map]; Strand: w
      • AT5G53270.1 - [+] show detail - Seed maturation protein
        Distance: -83; Region: promoter
      • AT5G53280.1 - [+] show detail - plastid division1
        Distance: -127; Region: promoter
    Flanking Genome Sequence: 53-2789-1 - 5-prime edge 
    TAATGTGACC GTGACTCTTC GATGCATTAG TGAGACCAAT TACTTTTTGG 
    GCCTCAGAAG CTTCGTAGAG CCCAAACATT CTACCAAGCT TTGAGACACG 
    TGCATAGTCC GTGCCAGCNT GTTTCTTGTT TTAGTATTTC CGGGTCGGGT 
    TTCACCCGTA TCCGGAAATC AAATTCATCG GAGCGCTTAA TTTGAGTCCA 
    CAATTAAAGT GAGAATTTTC CTGAAGAAGA AGAACTTTTG CTTTTTTTCT 
    GGGTTTGCTT TTTTGTTGTG TCAATGAAAT GGGAGAAATG GAGATCGAAG 
    AAATCGAAGC TGTTCTTGAG AAAATCTGGG ATCTACATGA CAAGCTTAGC 
    GATGAGATTC ACTTGATTTC GAAGTCTCAC TTTCTCAAAT CGGTTAAACC 
    TTCAAATAGA TCGGAGAAGA GAAAGAATCC TCACGGAAAT TCCGGCGAAG 
    ATAAGCGACC TGGTTATGTT TTCATCAAAG GATTCGCCGT CGATGATAAC 
    GACTCCACGA TTCAGGAGGC GAAGAGTCTT AACGCAATTC GAACCGCTCT 
    TGAGAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21607267 [Map]; Strand: w
      • AT5G53270.1 - [+] show detail - Seed maturation protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G53280.1 - [+] show detail - plastid division1
        Distance: -240; Region: promoter
    Flanking Genome Sequence: 53-2789-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAGTAG 
    ACTAGTATTG TACACGTGGA CTGTTGAAAG CCGACGTGTC AAATGTAAAT 
    TATTACGGAA CCGTTATTAT TGTCATCTTC CGTTTTCTTA TTATGTTTTC 
    TTATTTATTA ACCTAAACAA AACAGAAAGT GTATTAGATA ACGCAAAGCA 
    GAGAAACAAG AACTCTAAAA CGATGGGTTC ATCAAAAGAT GGTGCTAGTT 
    TCACTAATAT CTCTGTAGAG GAGCACTTTA GCGTCTCCCA ATCTACTACT 
    TGTGGTCAGG TAATAGGTTA AAATGAAAAA TTAGCCACGA TTAATAGAAA 
    AATCGTTTAC GATAACAGAA CAGTTAAAAG AAGTAAGCAA GTGCGGTAAA 
    ACATAGATTG GTAAAGATTT TGTACCGTTT TGTTGGTGTT CCCTTTAATT 
    TACCGTTTTA CCGATTGCTA GCTCATAGTA GGAATTGTAT AACTTCTACC 
    GCGGTGATAA AATGTAAAAA AACTTTTAAC TTGAAATATT TTACGTGACC 
    ATGTTGATAT CGTATGATGT TCGGGTTCGA CCTTTTGAAA CAGTATGCAG 
    GCACAACAGA ACAAATTTCC ACGGCGGCTG AAGCGCTAGT CGGGAGGTCA 
    ACGACATTGA CAGAAGNACT CAAAGCAGCG GCGAAAAATG TCGGCCGTAA 
    CCGGTAGAAA CCACCGACTT GGCTGCCATA AAAGAGGTGG AAGCTAGGGC 
    TATAGGAGGT GATATAGAAA GCGATGGGGG TGTAACCGCT GTAGC

AT5G53270.1

Model type
Protein coding
Short Description
Seed maturation protein
Computational Description
Seed maturation protein; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT5G53260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53280.1

Model type
Protein coding
Short Description
plastid division1
Curator Summary
An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.
Computational Description
PLASTID DIVISION1 (PDV1); BEST Arabidopsis thaliana protein match is: plastid division2 (TAIR:AT2G16070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR