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53-2791-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18531995 [Map]; Strand: w
      • AT4G39955.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2791-1 - 5-prime edge 
    AAGAAGACAG GACATGCGAT TAATGAAGAG AAACCAAAAG AGATGTACAA 
    ACACATGAAA TCTTTTCTTT GCACTGACGC AATGATTCCT CCAAATCACC 
    AGATCAATGC TAAGAGACTC ATGTTAGCAA ACNTTGATAT CCCCAGATCA 
    GCAGATCAAC AAGTGATGTT ACTAGCAGAA AAAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18531874 [Map]; Strand: w
      • AT4G39955.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2791-1 - 3-prime edge 
    TTTCAGTAAC ACCAATTGTG CTCTGTCTTC CCCTAAATAT CTGAAACAAC 
    AACACAAGAC AATTCATTTA GAAAAAAATG ATGATGATTT TGGAAAAATA 
    TGATAATTAA ATTATAGGAC CTTTTCAATC GATGAGCTAA TTCAACCTGG 
    AAATACNTTG ATCTTCCTCT CCCCATATCA TCAATGTCGG CTGCATATCA 
    ATGTTACCAG GATTCAAACA ATGATAATCT TTAAATTTAT ATAGATTTGT 
    ATGAACTGAG AGAGAGATCA CCTGTGTTAT CTTTGGAAGA TTGGCGAATC 
    TTCTACCCTT ATGCAGAGCT TCCACAAGTT CTTTCCTTTC TTGAAGATAG 
    TCTTTACACA TTACCTTGCA ACAAATCCTC ACAACATCAG AATTCAAATA 
    CTCTTTTCAA ACGAACTACT CTTAGTCTAG CTTACATCAA AGAGTGATGC 
    TTTTGAAACT AAACTAAACA ACTCAACACC ATAATAATNA CACAAACATT 
    TTGTCTGTAA AACTCAAAAG NATGGTGGNG GGCCCATTTA AATGAAA

AT4G39955.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G09430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR