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Mutant Lines
53-2792-1

53-2792-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 351596 [Map]; Strand: c
  - AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -420; Region: promoter
  - AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -420; Region: promoter
  - AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -427; Region: promoter
  - AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -450; Region: promoter
Flanking Genome Sequence: 53-2792-1 - 5-prime edge
```
AAAACAAATA AGGCCAGTGA AAATTTTCGT TATTTTATAC TAAAAAGATT 
CCATATAATT AACAAAGATA CCATGACAGA TTGATAAACT ATTGTTCACA 
TCCTAATTGC AACATTTATA GATAAAAATA TGAGCATACA TATTTATATA 
GAGATTAGTT AGTAAACACC TTCCAATTAT AAGCTACAAA TTCACACACA 
CAAACATAAA CACAAACAAA ATTACACACC AATCTCAAAG ATCATCAATA 
AAAACTGAAA AAGTTATGGT TCAT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 351712 [Map]; Strand: c
- AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -304; Region: promoter
- AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -304; Region: promoter
- AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -311; Region: promoter
- AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -334; Region: promoter

TTTGTTTTTA CATGCAAAGT GAAGTTGTTA AGAAAACCAT AAAAAAAAGC 
TGCAACTTTG CAACTTGAGA TCCACGAGCA AGGAACATTA CCCATGTGAC 
ATGATTCCTA CATGATCAGT CTTGTCTTCT ACAGTTATAC ACTACTACTC 
TATATCCACC TAAATATAAA TTAAATGCTT CTGAAATGGA ATAATCTTAA 
ACAGCACGTA GTTTTCATAT CACCGAAGAA AACGGCAGGG CTGGCAAAAT 
CACGAATTTT TTAAACAGGT ATAATAAAGA ACTAGAAAAC ACTAGGCCCA 
ATAAAAACAG TGGGCTTAAA AAGCGTTTTG ATTTAGGGTT AATGTGTGCG 
TAACATGTGA TCATAGCCCA CGAGTGGGTA AGGAGTGTCT TCATCTTCTT 
CTACCGGAGA TCGAGAAATA GCCGACGAAG TTTTGTTTTT TGAGTAAAAC 
AGTATTCGTC GGACAACCGA AGCGAAATCC CTAATTTCCC ACAACACGAA 
ATACCAATTT CCCCAATTCG AAAACAAACA CGGTCTGGTA

AT4G00830.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR

AT4G00830.4

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR