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Mutant Lines
53-2793-1

53-2793-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24206869 [Map]; Strand: w
  - AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
    Distance: -820; Region: promoter
  - AT5G60120.1 - [+] show detail - target of early activation tagged (EAT) 2
    Distance: -917; Region: promoter
Flanking Genome Sequence: 53-2793-1 - 5-prime edge
```
GTTTTTGTAA TAATAACAAC TTCTTAAAAT GATATAACTT TTGTTACTTT 
ATGCATGTAA TTGTTGATTA TAGCTAGCTT CTACACCTTT TTCTAACATG 
TGACACATTT TTTTTTACAT GTGACACATT TGTTACCGTT GGTTGGATAC 
CTTGTTATCC ATATAAATCA ATAAAAAGTC ATATTATTCA TC
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24206347 [Map]; Strand: w
- AT5G60110.1 - [+] show detail - pumilio 18
  Distance: 3410; Region: intergenic
- AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
  Distance: -1342; Region: intergenic

ACAAAAACGA ATGTGTATGG AAAATAGTTA AAGATGATGG GGAAAAAAAT 
CACTAACATC AGGTTTGATA GCTTTAGTTT TTCTTACTGG ACATAGTGAT 
GAAATTTTGT TTTAATTTCT AAGGTTTTGA CACATTAATT ACTATTGAAA 
TTGAATGATG TATGTTATCT TCGCCTTGTT TGTAGCCAAG TTTTAGTAAA 
TAAAAATGAA GCATGTGTTT CCTAGTTCCT ACAATATCAC ATTGTAAAAA 
TCTATCAAGT CTAGAGAAAA TTATCTCTGC ATCAACTGTG TCTCAATTTT 
CTTTTAGATT TTCATTGAAT GAATAGCTAT AAGTAGAAAA AAAAACACAT 
ATCCGATCAA ACGTTGATAA CACAAACATA TTGTATCAAA TCTTATGGTA 
TCTTGTATTC ATTAGTATTG TCTAAATCTC TAAGACTACT ACATAGCTTG 
AGAGCAATGT GATNCAAAGA GATCANCAAA GAAATGGATA GGTTTCCAAA 
ATGGATAATT TCGAAAGTCT AAAACAAAAT ATATTTTGAG TNCAAGAAGA 
CATAGGAAAG AACAAAAGCC AATAAGGGGG CTTCTTTTAC AATCAAAGGA 
AATTATTGTT TNTTAAAAAT AGAAATAAAA TGTACGTACC ACCGTATTAT 
GTTCTTAACC CCAGGTTACG GGCGAAAAAA TGAAAATGAC CTAAAAATAT 
CTATNCTTTG TGTCCNTCCA AATCTNTTTT TTCTTTGGAA ATGTTAT

AT5G60110.1

Model type: Protein coding
Short Description: pumilio 18
Curator Summary: Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description: pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60120.1

Model type: Protein coding
Short Description: target of early activation tagged (EAT) 2
Computational Description: target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.1); Has 5042 Blast hits to 4634 proteins in 238 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 4961; Viruses - 7; Other Eukaryotes - 53 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60120.2

Model type: Protein coding
Short Description: target of early activation tagged (EAT) 2
Computational Description: target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link: InterPro Scan - TAIR