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53-2794-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11919100 [Map]; Strand: w
      • AT1G32890.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-2794-1 - 5-prime edge 
    AAAAATATTC CTTCGGAAGC TCTTTTGTCA GATCCGCTTC TACAAGAATC 
    TTTGCCTCAT CAAAACTATC ACATGCCTCT GTTTTTGGGT GCAGACGAAC 
    CGGCTTACCT ACTGCATTCG CTAGAAATTC TAACCCTTTG TCTGTAAACA 
    TCGTTGGTGG AACATCCGTT AGCGTAATCC ACAGAGGTAT TGACTTCATG 
    GCTGGTTGAG CTTCCTCCGC AAATGGAGTC CATTTGGATA CAATCATGTG 
    GATATCCATG AGATTCCACA TTCCTCTGTT CAAAACACGG TTCCTCATAC 
    TTTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16688052 [Map]; Strand: w
      • AT5G41730.1 - [+] show detail - Protein kinase family protein
        Distance: -907; Region: promoter
      • AT5G41740.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -574; Region: promoter
      • AT5G41740.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -574; Region: promoter
    Flanking Genome Sequence: 53-2794-1 - 3-prime edge 
    TTCATAGTCT TTACTGCTAC TACAATAAAA GAGAAGTTAT CACAGAAATT 
    ACGAATTTGA CAACTGAAAT TGGGCTCGTA ACTTTATAAC CGGGCCGAGC 
    CTGAGAACTC GTTTTCCGAT ACTAGGTTTA CNTGGTTGGT TAGGTTATTC 
    AACCTTTTTT GGACCTTTTT GACAAAAAGA AAGTTCGCTA CAAATTCGTT 
    CAAAGCAGTA ATTTATCTTG ACGCGTCACT AAAATTTTGA TCATCCCAGC 
    TTATTACACA TTTAATAATT AGTGCTGCGG AAATCTCCTA AATACGTGGA 
    TATTTTGACA ACGTGAAGGC CATAACATAA ATACTATATG CTTAAATAAA 
    CAAATACTAT TAAAAACTGT AATATACAAC GAAAGTCGCG GGAACAG

AT1G32890.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-37 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT5G41730.1

Model type
Protein coding
Short Description
Protein kinase family protein
Computational Description
Protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF1221 (InterPro:IPR010632), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT1G64300.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41740.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41740.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 3146 Blast hits to 2582 proteins in 174 species: Archae - 0; Bacteria - 334; Metazoa - 256; Fungi - 13; Plants - 2498; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR