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53-2795-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4876280 [Map]; Strand: w
      • AT5G15060.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -331; Region: promoter
      • AT5G15070.1 - [+] show detail - Phosphoglycerate mutase-like family protein
        Distance: -235; Region: promoter
      • AT5G15070.2 - [+] show detail - Phosphoglycerate mutase-like family protein
        Distance: -308; Region: promoter
    Flanking Genome Sequence: 53-2795-1 - 5-prime edge 
    TACACACATG GACCATTTCG ATTACTTGAA AATTTAAAAC GCGTTCTATT 
    GACCTTCTCA TTAGGCATTG TGAATTTACT AGTGTATAAT TACATTGTGA 
    TATTTAATTG TGGATACACA AGAATAATCA CAATTTTAGA ACCTTCCTAA 
    AAAGAACACC GTAAATATTA TCATGTATCC ACTTATTTTT TAAAAATTCA 
    CTTGAGTTTT GTATAGTTGT GGGTCGGTGG TTAATTAAAT TATTAATGAC 
    CATGATTTTA ATAAACCAAG CAAAATCTAT ATATAATGGT AATCATTTTT 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4767922 [Map]; Strand: w
      • AT5G14760.1 - [+] show detail - L-aspartate oxidase
        Distance: -546; Region: promoter
    Flanking Genome Sequence: 53-2795-1 - 3-prime edge 
    AAAATTCATG GAAAAAGAAC ATTCACTTTT CCATGACTCG TGGCCAATGC 
    AAATCTCCAA CGGCCACAAC TATTTATTTC TATAACTATA ATTTCTGGAA 
    AAAGAAAAAA AAANGGG

AT5G14760.1

Model type
Protein coding
Short Description
L-aspartate oxidase
Curator Summary
At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2
Computational Description
L-aspartate oxidase (AO); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, L-aspartate oxidase activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112), L-aspartate oxidase (InterPro:IPR005288); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-1 (TAIR:AT5G66760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15060.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Computational Description
Lateral organ boundaries (LOB) domain family protein; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 22 (TAIR:AT3G13850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15070.1

Model type
Protein coding
Short Description
Phosphoglycerate mutase-like family protein
Computational Description
Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15070.2

Model type
Protein coding
Short Description
Phosphoglycerate mutase-like family protein
Computational Description
Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, leaf whorl, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2).
Link
InterPro Scan - TAIR