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53-2796-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24115753 [Map]; Strand: w
      • AT5G59870.1 - [+] show detail - histone H2A 6
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2796-1 - 5-prime edge 
    NTGGNNGNAC TANCATAATC GGTNATGCAG ANAACNGCCG GTACNGGATA 
    NTGGCCATAC TACNTNCATT NCTTNTCGGG AGAAGCANGA TGCCTCGNNG 
    TTATCCTTGA TTGNTNGCTA TCTCTCGCAG CTGTNACCAT GCCCGCTCCA 
    GGAACCTGAG ATCAAGANAA TTCTNAATCA NAAAATNGAT TNTGAAATGN 
    AAAAAAAAAA TTTNACTTNN AAGATCCAGG ATGCGGGAAA NGCATNACCT 
    TGCTGGGGAG AGGAATNNAT GAANGGTGGN CNNGNGGNCC GNACCNCCCC 
    CACCAAGGNT TNAANCGNNN ANGGCNTNNT NCCGGANCCA NNGGATTCTT 
    CCNACCGGGA NTGGAAGACC GGNTCNNATC GATTTCNAAC CCGANGTGGN 
    TTTTGGGGCA CGAACGGGGT TTTCTTCCTC CGAAAGCTTT CTTCACTTTT 
    CCGGGGGATT CCATNGCTNC GGTTATNGAT TACTGAAATT GANAGTTTAG 
    AGAGATTGAA AGTATCGGAA GTTGAAAATT TGNGATTTAA NGTTGAAGGG 
    TNCNCTGNGA ATTNATNGGG NAGNGAAAAA AANNGANGGG NGAGGNTTTT 
    TAANCCATNG GNAGNNGNGT TTNNCGGGGG GATGNNNNNT NNNNCCCACC 
    CNGGGTNTTN TAAATNNCCC CATNNTNANN NAGGNTNCCT NTTTGNAANG 
    GNNCCCNNNT TTNNNNTNNA NATNNAAANN GNNANNNNNN GGCGGNNTNN 
    NNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24037928 [Map]; Strand: w
      • AT5G59660.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 53-2796-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TCAAGACAGA GGCACAAAAG GGTTGTGGAT GATAACAGAG AAAAGTTTAC 
    AACATATGTG GGAAGTTTCT TACAGTAGCT GGAGTCCACC TTTCCTTTGT 
    AGGGATTGAG GAATTGTACC GTTAAGATCG TTCCCGCTTA AGTTTCTGCA 
    TTAAAAGAGC AATGAATCTT GTTTCCAGAA AAAAAAACAG AGCAATGAAC 
    CTGAGGTAGA ATTGGAAAAG CATTAGAAAA TATGCTTGAG AGACACCTTA 
    CATGAACAAC AATGATTTTA TGTTGCCTAN AAACTCCGGC ACCTCTCCGG 
    TCAAGTTGTT ATTCGACAAG TCCCTAATGT TAGCAAAGAG AGAATTATCT 
    ATGCTATTAT TACATCTGAT TTCTTCGCAT ATATAGAACA ATTTCTTGCT 
    TACAACTAAC AATGGACATA CTTACAGTTT TTCTAGTTGC GTAAGGTTTT 
    GAATGGCAGC TGCTATGTTT CCAGTTAAAC CACTCGAAGA CAAGTTTCTG 
    GTGACATTTT CAAAACCACA TTCAAAGTTG TTAATGATCA TGATTACCAA 
    CGGATTTGAA GAGTGACTGT GCGTGCATGT GTACTAGTGA ACTCATGACT 
    TACAAAGAAG TGATTCTTGG TGGTGTGGAG GCATNCGTGT TGCTGCAGTT 
    TAAAGCGTCC CACCTAANAT GTANAGGGAC ACATGGATCA CCTTGCCAGN 
    TTATTCTACT CATTCATANG TGGCTTCAAT GTTN

AT5G59660.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59870.1

Model type
Protein coding
Short Description
histone H2A 6
Curator Summary
Encodes HTA6, a histone H2A protein.
Computational Description
histone H2A 6 (HTA6); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 12 (TAIR:AT5G02560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR