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53-2807-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17956156 [Map]; Strand: c
      • AT4G38340.1 - [+] show detail - Plant regulator RWP-RK family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-2807-1 - 5-prime edge 
    GAACTAATAT ATTTAGTGTT TATATAAAGT AACAGGATGT TAACCATTGA 
    AGCTCTTCAA AGGTTGCTTA CGTCAACCAA ATAACTAATA ATAATAATAA 
    TGCAAAGACA TGGGAACTAG TCAATGCCTG AGCAGTGTTC CAACAGTGCA 
    GTGACAAGAA TATTGCCAGG TAAGTATATT TTTACCATTT CTTACATGGG 
    AATTATAAAG ACTCAATCAG GCTGACTTTA TTCATCAATG TAATCTTTTT 
    TCTTTTTCTT TTCCCTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17956277 [Map]; Strand: c
      • AT4G38340.1 - [+] show detail - Plant regulator RWP-RK family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-2807-1 - 3-prime edge 
    TCACAATCGG AATTTCTATC TCGCAGGCCT TTGATCTCCG GACTTCACAA 
    ACCTCCATCG TTCCAGCCTC TCTCAAGGTC ACTTCTTCTT CTTCTTCTTC 
    TTCAAGAACA GAGGTGGCCT CTATTCTCCA AGGCATCTGC AGTTCACACG 
    GACTCCCTCT AGCCGTCACG TGGGGTCACC AAGACTCCTC ATCCTGCCTT 
    TCGGCTCTAA TATCGGCCTC TTACGCCGCT GACCACGGCA GCCGCTGTTT 
    CCTGGCCGCC TGCTCAGAGC ACCATCTACT CGGGGGCGAA GGAATCGCTG 
    GAAGAGCTTT TGCTACCAAG AAACAGTGTT TCGCAACAGA TGTTGCCATC 
    TTCAGCAAGT GGAGCTACCC TCTCTCCCAC TACGCCAGGA TGTTCGACCT 
    CCACGCTGCT CTTGCCGTCC CTATCCTGAC AAGAGGCAAC CGCACCGTCC 
    AATTTGTTCT CGAGCTCTTC TTCCCGAGAG ACTGTCTTGA CATCCAAACT 
    CATAGTCTGA CCCTCGCCTC CCAACTCAAG CTACGCTTCC AGAGCTCACC 
    ACATCTGATG GTAGACGACA ACCAAA

AT4G38340.1

Model type
Protein coding
Short Description
Plant regulator RWP-RK family protein
Computational Description
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 720 Blast hits to 573 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 7; Plants - 646; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR