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53-2810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4696517 [Map]; Strand: c
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G14570.1 - [+] show detail - high affinity nitrate transporter 2.7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2810-1 - 5-prime edge 
    CATCGGACCA CGTACTTCCT CAGCGATTCT CTCTTTTCTC ACCGCTCCTG 
    TAATCCTCTC CGCCTCACTC GTCTCCTCTC CGACGTCCTT CATCCTCGTC 
    CGTTTCTTCG TCGGCTTCTC GCTCGCTAAT TTCGTAGCCA ATCAATACTG 
    GATGTCCTCC ATGTTCTCCG GTAACGTCAT TGGTCTCGCT AACGGTGTCT 
    CAGCCGGTTG GGCTAACGTC GGCGCCGGTA TCTCTCAGCT CCTTATGCCT 
    CTCATATACT CCACCATAGC CGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4696633 [Map]; Strand: c
      • AT5G14565.1 - [+] show detail - MIR398C; miRNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G14570.1 - [+] show detail - high affinity nitrate transporter 2.7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2810-1 - 3-prime edge 
    GTCCGATGAG ATCACAGAGT GGTCCCATAG CGAGGCGAGA GAAGATGGAG 
    CCAGCGAAGG AAGCGATTCC GGCGGCGGAT ACGGTGGAGG CAGAGAGGTT 
    GAGGTCGGAG GAGATGACTG GGGACCATGA GGAGGGATGG TGAC

AT5G14565.1

Model type
miRNA
Short Description
MIR398C; miRNA
Curator Summary
Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.
Link
InterPro Scan - TAIR

AT5G14570.1

Model type
Protein coding
Short Description
high affinity nitrate transporter 2.7
Curator Summary
Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.
Computational Description
high affinity nitrate transporter 2.7 (NRT2.7); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter2.5 (TAIR:AT1G12940.1); Has 7777 Blast hits to 7739 proteins in 1625 species: Archae - 132; Bacteria - 6743; Metazoa - 43; Fungi - 326; Plants - 261; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR