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Mutant Lines
53-2826-1

53-2826-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 24195988 [Map]; Strand: w
- AT1G65120.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G65120.2 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon1 (5UTR)

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTGATAATA ACAACAGAGA TGAAGCATTT ATCACGTGTG 
ATCCACGTAA CAGAGTTGTT GAAGCTTTTA TCACGTGAAA TCCACGTGAC 
AAGAGAAACC CAAGTCGTCG TGTCTTCTTT TTCGAACAGT TCTTCTTCGA 
TATCTCCATT GGGGAATTCT GTCGAACATC TTGTGTGCAT TCATTGTTTT 
GAGTAAATTA CACAACAGCT TCTATTTAAT TTCACCATCC AGAATAAACA 
GAAAAAAGCA CCCCAGAAAT GTGTGAATTA ACAGATAAGA CAAAAAATTT 
GTGTGAAAGT TTTCGAATTC GGGATCAAAG ATGGTCATGG GATGATCGAA 
ATTGGTTTAT GTTGTGTGAG AAGAATTAAC AAAAACCTTA AGTCGTTAAC 
AATTGTTTAT ATATTTTGTT GCAATTATCT TATTAGTACT TTATTACTAA 
AATCAAGTAA TGAACCAAAA GATTACAAAC TTGAGTTCCA TACTAATACA 
TTTCTATCAT TGAACAGCTT CATAAAAAAG AACCTCTGAA CGAATCTTCC 
TTTCTCCACA AATTTTGACC ACACTCTTCC AGTTGCCAAC AACCTACGGC 
ATCACCACAC ATCAATATAT GTCTTAACCC AACAAAGTTC ACAATTCAGG 
GCAATAAAGA CAAAGGCAAC TGTTTCATCT CACCNCCNNC TGCTGNAAGC 
TTNNTNTNNN TNNACNNNNN NN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 14014 [Map]; Strand: w
  - AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -655; Region: promoter
  - AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
    Distance: -613; Region: promoter
Flanking Genome Sequence: 53-2826-1 - 3-prime edge
```
GATATCAGAG CGTACGAAGA AGAAGTGGTT TTTGGAACCT GAAATTGACT 
CTCTGCGGGG AAGCGATATC GATATCGGAG CGTACGAAGA AAACCCCGTC 
CGGCGGGAAA GTGATGACGT TATTGAGGAT CCGTTTATTC ACATCGATCA 
CCTGCAAAAC GTCTCCGGCG GTCGTCCCAA ACAAGCCTGC CTTTTCTATG 
ATGAACAACT GTTCCTTCTC CGTCGTCCAC AAGAGCCGCC ACGTAGCAGA 
TAGAGAGTCG TCTGTGGTGA TGGAGCTGCG CCCGATAACC GTCATGGATT 
CGATGGCGTT CACGATTTCA TCTCTCTTCG AC
```

AT1G65120.1

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 468 Blast hits to 425 proteins in 93 species: Archae - 0; Bacteria - 32; Metazoa - 49; Fungi - 38; Plants - 218; Viruses - 8; Other Eukaryotes - 123 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G65120.2

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00026.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00030.1

Model type: Protein coding
Short Description: Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description: Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00040.1

Model type: Protein coding
Short Description: Chalcone and stilbene synthase family protein
Computational Description: Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR