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Mutant Lines
53-2833-1

53-2833-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24139350 [Map]; Strand: w
  - AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G59950.5 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -589; Region: promoter
  - AT5G59950.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -747; Region: promoter
  - AT5G59950.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -747; Region: promoter
  - AT5G59950.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -832; Region: promoter
  - AT5G59950.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -845; Region: promoter
Flanking Genome Sequence: 53-2833-1 - 5-prime edge
```
CCATCATCTT AAAAGCTTGT GATGAAGACA ATGTATACAT ATGTTCTCGT 
TCATGTTTTT CTGATATGGT TTCAGCTAGA TCATGTTGAT TGAGTGTTTA 
ATTTATTTAA TTTTGTGTGG AAAGGATGAA ACTTCGATAC CCTTTATATT 
TTACAAGATG AGTGAATTAT TCATGGTTGC ATTCGCTAGC TGCCCTACAA 
GTCCAAATTC AATATCTGAT TTTAATTTGA ACTTCTTTAC TTTGCTCGTC 
TTGCAACATA ACTGAGTTGT GATTTAAATT CTAATAGATA CTGTTAAGGG 
TTTCCATGTC TCTTTATTTT ATCTATATAA AGATATGCCT AAGAGTTTAT 
AATTCCATCA CTCATAAGAT TAATGCAAGA AAATATCTTA GAGACTACAA 
GGTTCAAAGA TACTAGGATT GAACCCGCGG TTTCCCGCGG GATAGGCTTT 
GTATAGTTTT TTTATTAAGT AAATTATTAT ATGTTATAGC ACAAAATATA 
AATATATATT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24139231 [Map]; Strand: w
  - AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G59950.5 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -708; Region: promoter
  - AT5G59950.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -866; Region: promoter
  - AT5G59950.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -866; Region: promoter
  - AT5G59950.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -951; Region: promoter
  - AT5G59950.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -964; Region: promoter
Flanking Genome Sequence: 53-2833-1 - 3-prime edge
```
ATAGGAGACC TTGCATCGAG AGCGACACAT GCTGCATAAT GGTCGAGTGT 
TGTGATTGTT AAGAACCACA TAAAATTTCT TTCCCCCAAC AGTATCAACC 
ATGCGTCCTG GCATGAGACG TGAGAAATCT CCTAGTACGC ATTCCACATG 
CAATGTGACT CCACAATCAA AGCTTGTATA GAACCATTTA CTTGGATCTA 
ACTCTGTCTC GCATATATCG CACCAATACT TTCCATTCGC CGTTTCACCA 
CAAGATAGAG TGAGAGGGTG CTCATCGTTT CTATGCCTTA TCTTTAATGG 
CAAACTAGCG CAACTTAAAC ACAAATCAAA GTCACAAGCA TTGCAACAAA 
GCATATGAAC CGTTACCTTA TGGCATGCAT TGCAAGAGTG ATTTTCCTTA 
GAATCAAAAT ATAGTGGATG CAAATGGCCA TTATGAACGA ACGGCTCAGA 
AAGAGAACCA CAATGTACAT CTATCTCCCA CCCTCTTTGA GATGCGTACT 
TAAAACCAGT ATAATT
```

AT5G59940.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.1); Has 10964 Blast hits to 9767 proteins in 726 species: Archae - 14; Bacteria - 1131; Metazoa - 5027; Fungi - 1686; Plants - 1961; Viruses - 34; Other Eukaryotes - 1111 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.4

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.5

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2).
Link: InterPro Scan - TAIR