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53-2838-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5944451 [Map]; Strand: c
      • AT5G17930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -21; Region: promoter
    Flanking Genome Sequence: 53-2838-1 - 5-prime edge 
    GCCCAATAAC CTGGCGGGCT TTGCTTCTCC ATCTTCGTTA TAATTTTTTG 
    AAAATTCAAC AAAAGAAAAA CCCTAATTTT TCTGCAAATT CTTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5944574 [Map]; Strand: c
      • AT5G17930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -144; Region: promoter
      • AT5G17950.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-2838-1 - 3-prime edge 
    CCTAAAATCC AAGATGCCAA AATTTTGGCA ATTACGTTTT CTTTTTTCTC 
    CTTATGGTGA GAAATGTTTG GTTGGCAAAT TCTCTAAATA CAAATGTAGG 
    AACCAAACAC AACATATGTT TGTGTCCACA AGATAGAAAA TAGAACAGCT 
    AGGGTTTGTA GACATTAAGC GTACCAAACG TTGCATGATG ATTCCTCTTT 
    CCCTAGATAT AGAGATGAGA CCCATATCAG CTAGGGTTTG TATCCCTTTC 
    TCCACGTCCC AGCCCTTCTC CGAAAGCGAG AATATTGTGT CTTTCACGTT 
    CACACCAAAG CTTATATTTT CTGTTAAGAG AGATTAAATG AAGTTTTGTG 
    TTTCTCAGAT AAACCATCAT ATGCAAATCT AATTGCTTTA TAAATTTCTT 
    TGTAGTCAAT ATAGGTTTCG AGTTTAGCTG GTGTCATTAA CCACTCCTCT 
    TTGCTCTTCC CACGTAAAGC CGAACCTAAA ACCTTGAGAC CAAGTGGAAA 
    AGGAGCAACA AGCTTAGCTA CTTCAGTGGC ATGCTTCACG TAACCTCTTG 
    GTGGAGAGCT TTTCCC

AT5G17930.1

Model type
Protein coding
Short Description
MIF4G domain-containing protein / MA3 domain-containing protein
Computational Description
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17950.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR